AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo27g01236 ATGGCAACAAGCTCAATTCTAAAAAAAACATTAACCACATCCTTAAACCCTTACAAAACACCAATCCTAAGATCCCTATCCACCGCAGCAGCCGCCACACAACAACAACCTCAACCCGACACAGACAACAACACCTTCACTTTTTCAGACCAAACCAATAAAAATGATGAGATAATTATTAAAGGAAGGAAACCAGCACCAGCAACATCAGTAACGATGCCGATGTCGTTCATGACTGGTTCAATTGTTGGAAAGAGGTTTTATAAACAAGTGACTACCAGGGAGTCTGATGATGGTGTTGGCTGGTCTGTTATGCTTGATTACAGGACTCTTAAAACTCCGTCCAAGAGGCCCTTGAAGTGTTCGAGTTTGTTTCTCGCGAAAGCTATTGCTGCTGAATGGGATTATCAGCTCGCAGATGGAATCAGGCCATTTACAATGCCTTTAATGAAACTTGCATGTACTGCTTTGGAGAGAGTTCCCCTCATTAGGTCGAAGATTATTGATAGTTTAATGCAGAGGTTTAATCAGGATTTAGTCTTTTGTCGGGCCCCAGATGATGATGTGTTGACAAGTGGCGTCCATGAATTACAAGTGCAGAAAATTGATCCTCTTCTTAAGTGGGTAGAATCAGAGTTTGGAATTAAGCCCGTTGTATATTCCAGTTTTTTTGGGGGCAAACAGGAGGATGGTCTCGTAAAAGCTGTAGAGAACCTTCTTAAGAAAACAGATGATAATGAGTTAGCAGCAATCGATGCACTTGCTTCAGCATCACATTCATTAATAATTTCAATTGCAATCTTTCGTGGGAGACTACAAATTGATGAAGCAATTGAATTGATTAGACTTGAAGAAGATATGCAGGTTGAAAAATGGGGTCTGGTAGAAGGTGGTCACGATCTTGATGTTGCAGACCTTAAGGTGCAAATCTCATCTGCAGCGGTTTTCCTTGGACTTACAAGACGGTTTCCAAGTGGTGTGTAG 984 41.36 MATSSILKKTLTTSLNPYKTPILRSLSTAAAATQQQPQPDTDNNTFTFSDQTNKNDEIIIKGRKPAPATSVTMPMSFMTGSIVGKRFYKQVTTRESDDGVGWSVMLDYRTLKTPSKRPLKCSSLFLAKAIAAEWDYQLADGIRPFTMPLMKLACTALERVPLIRSKIIDSLMQRFNQDLVFCRAPDDDVLTSGVHELQVQKIDPLLKWVESEFGIKPVVYSSFFGGKQEDGLVKAVENLLKKTDDNELAAIDALASASHSLIISIAIFRGRLQIDEAIELIRLEEDMQVEKWGLVEGGHDLDVADLKVQISSAAVFLGLTRRFPSGV 327
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo27g01236 327 Pfam ATP12 chaperone protein 85 210 IPR011419 GO:0043461(InterPro)
Chmo27g01236 327 Gene3D ATP12 ATPase 147 322 IPR023335 -
Chmo27g01236 327 SUPERFAMILY ATP12-like 72 317 - -
Chmo27g01236 327 PANTHER ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2-ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR 23 320 IPR011419 GO:0005739(PANTHER)|GO:0033615(PANTHER)|GO:0043461(InterPro)
Chmo27g01236 327 Gene3D - 82 144 IPR042272 -
Chmo27g01236 327 MobiDBLite consensus disorder prediction 28 50 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo27g01236 K07556 ATP synthase mitochondrial F1 complex assembly factor 2
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Event-related genes

Select Gene_1 Gene_2 Event_name
246114 Chmo27g01236 Chmo25g01418
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:119907520 Chmo27g01236 Chmo-Chr27:100826523 wgd
Chmo Chmo-Chr26:131646730 Chmo27g01236 Chmo-Chr27:100826523 wgd