AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo27g01468 ATGGCTGTTAAGGCTGCTATACATGTTACAGACGTGTCACATTTGGATCAAGTTAATGAGGGTGCCGTTTCTTTGTCCTCGCTTTATGCTACACGTCTACCTAATGGATTGGATGTGAGCAATGGCCAAAAAAGTTTGCCTAAGTTTATGGTGGTGGGTCACCGTGGTCATGGCATGAATGTGTTGCAGTCAACGGATAAGAGAATGAAAGCTTATAAAGAAAACTCTATTACTTCGTTCAATAATGCTGCTAATCATGCTCTTGATTACATTGAATTTGACGTTCAGGTGACAAAAGACAACGTTCCAATCATTTTCCATGACAACTTCATCGTCTCTGCAGAGAATGGTAAAATAGTTGAAAAGAGAGTGACCGATTTGACTGTTGATGAATTCTTTAGCTACGGTCCTCAAAGAACATCCGGCCAAGTGGGAAAATCTTTGCTTAGGCAAATCAATGGAAACATTGTCGGGTGGGACGTTGAGGTCGATGATCATTCTTGTACTCTTGAAGAAGCATTCCAAAAAGTTAACCCTAGTTTGGGATTCAACATTGAGTTGAAATTTGACGATTATGTTGTTTACGAAGAAGAGTATCTCATTCATGTTCTTCAAGTCATCTTGAAAGTGGTATATGAAAACGCCCAAGAAAGACCTGTTCTATTTTCAACCTTTCAACCTGATGTGGCTTTGCTAATGAAGAAACTTCAGCACGCTTACCCGGTGTATTTCTTGACAAATGGAGGAAACGAGATATATGATGATGTGCGAATGAACTCATTAGAAGAAGCCAAGAAGCTTGCCATAGGAGGTGGTTTGGATGGAATTGTTTCAGAAGTAAAGGGCATTTTTAGAAACCCTTCAGTCGTACGAGAGATTAAAGAATCAAATCTCTCACTCCTTACTTACGGAAAACTAAATAATGTCCCTGAAGCCGTGCATGTTCAATATCTTATGGGTGTCGAAGGTGTGATTGTTGACTTGGTACAAGAAATTACGAGTGCGGTCAAAGCTTATAACAGCAACAAGACTGTAACAGAAGGGGAGGAAGAAGGATTAAAGGTGATGGACAACACCAGTAAGATCGAATTGTCGTTTCTGCTGAGCTTGGTTTCACAATTAGTTCAGCATTAA 1134 39.95 MAVKAAIHVTDVSHLDQVNEGAVSLSSLYATRLPNGLDVSNGQKSLPKFMVVGHRGHGMNVLQSTDKRMKAYKENSITSFNNAANHALDYIEFDVQVTKDNVPIIFHDNFIVSAENGKIVEKRVTDLTVDEFFSYGPQRTSGQVGKSLLRQINGNIVGWDVEVDDHSCTLEEAFQKVNPSLGFNIELKFDDYVVYEEEYLIHVLQVILKVVYENAQERPVLFSTFQPDVALLMKKLQHAYPVYFLTNGGNEIYDDVRMNSLEEAKKLAIGGGLDGIVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVKAYNSNKTVTEGEEEGLKVMDNTSKIELSFLLSLVSQLVQH 377
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo27g01468 377 Pfam Glycerophosphoryl diester phosphodiesterase family 54 329 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Chmo27g01468 377 ProSiteProfiles GP-PDE domain profile. 49 336 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Chmo27g01468 377 Gene3D Phosphatidylinositol (PI) phosphodiesterase 39 337 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Chmo27g01468 377 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 39 345 IPR051578 GO:0046475(PANTHER)
Chmo27g01468 377 FunFam Glycerophosphodiester phosphodiesterase GDPD2 40 338 - -
Chmo27g01468 377 SUPERFAMILY PLC-like phosphodiesterases 47 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo27g01468 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Event-related genes

Select Gene_1 Gene_2 Event_name
56876 Chmo27g01468 Chmo8g02964
207020 Chmo25g01507 Chmo27g01468
233412 Chmo27g01468 Chmo26g01628
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr25:126046810 Chmo27g01468 Chmo-Chr27:113696271 wgd
Chmo Chmo-Chr26:135444081 Chmo27g01468 Chmo-Chr27:113696271 wgd
Chmo Chmo-Chr26:181185003 Chmo27g01468 Chmo-Chr27:113696271 wgd
Chmo Chmo-Chr27:113696271 Chmo27g02666 Chmo-Chr27:172440831 wgd
Chmo Chmo-Chr27:113696271 Chmo7g02830 Chmo-Chr7:185968989 wgd
Chmo Chmo-Chr27:113696271 Chmo8g02964 Chmo-Chr8:191871254 wgd
Chmo Chmo-Chr27:113696271 Chmo9g03007 Chmo-Chr9:192403577 wgd