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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00050 ATGGCCATTTTATCACCTTATTCATCTTCTTTCTTAGACACACTCTTTTGCAATGAAGATCATCATCATTGGAACCTAGATGACCATGAAGATCAAGATGAATTTACACAAACCACCCTTGTAGATTCATCTAATGTTCACTTTACACCCTTTGACCAACAAGATCTATGTTGGGACCATGAAGAACTTGTGTCTCTTTTCACTAAGGAACAAGAACAAGAACAACAAACAACACCTTCTACTTTTGTTTTTGACAAAACAAACCCTTGTGTTTTTCTTGCTAGAAAAGTGGCTGTGGAGTGGATCCTTAGGGTTAAACATCATTATGGGTTCACACCACTTACTGCCATTTTAGCTATAAATTATTTTGATAGGTTTGTTTCTTGTGTTGAGTTCAAGAAAGATGAACCTTGGATGGTTCAGCTTGTTGCTGTTACTTGTCTCTCATTGGCTGCTAAAGTTGAAGAAACACAAGTGCCACTTCTCCTAGATCTTCAAGTGGAAGATAGTGGGTTCTTTTTTGAAGCTAAAAACATACAAAAAATGGAGCTTTTGGTGATGTCAGCATTGAAATGGAGGATGAATCCAGTGACACCAATTTCATTTCTTGATCACATTGTAAGAAGGCTTGGATTAGCAAATCATAATGTTCAATGGAATTTCTTCAAGAAATGTGAAGCTTTAATTCTTTGTTTAGTCAAAGATTCAAGATTTGTGTGTTATAAACCATCTACATTGGCCACAGCAACAATGCTTCGAGTTATAGATGAAATTGATCCTCCCAATTCCATTGACTACAAAAGTCAACTCTTGGATCTTCTCAATACCACTAAGGAGAACGTAAACGAGTGTTACGAGCTTGTTATGGAGCTATCTTATGATACTTGCAACAAGCGAAAACCTAATGAGAATGATTCAACAGCGTATCCGGATAGCCCAAGTGGCGTGATTGATTTTACGTGTGATGAAAGTTCAAATGATTCATGGGAATTTAGTTCACCTCACTTCCGCGAACCTTTGTCAAAGAAAGCAAGAATGGATCAACAGTTCGGGTTTGGTTCACTTTTTGGACCATTTGTGACCCCTCGATATCCATAA 1098 37.43 MAILSPYSSSFLDTLFCNEDHHHWNLDDHEDQDEFTQTTLVDSSNVHFTPFDQQDLCWDHEELVSLFTKEQEQEQQTTPSTFVFDKTNPCVFLARKVAVEWILRVKHHYGFTPLTAILAINYFDRFVSCVEFKKDEPWMVQLVAVTCLSLAAKVEETQVPLLLDLQVEDSGFFFEAKNIQKMELLVMSALKWRMNPVTPISFLDHIVRRLGLANHNVQWNFFKKCEALILCLVKDSRFVCYKPSTLATATMLRVIDEIDPPNSIDYKSQLLDLLNTTKENVNECYELVMELSYDTCNKRKPNENDSTAYPDSPSGVIDFTCDESSNDSWEFSSPHFREPLSKKARMDQQFGFGSLFGPFVTPRYP 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00050 365 Gene3D - 72 286 - -
Chna2g00050 365 SUPERFAMILY Cyclin-like 56 195 IPR036915 -
Chna2g00050 365 SMART cyclin-7 100 188 IPR013763 -
Chna2g00050 365 FunFam CYCLIN D32 196 286 - -
Chna2g00050 365 Pfam Cyclin, N-terminal domain 71 195 IPR006671 -
Chna2g00050 365 PANTHER CYCLINS 39 291 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Chna2g00050 365 CDD CYCLIN-AtCycD-like-rpt1 94 192 - -
Chna2g00050 365 Gene3D - 80 195 - -
Chna2g00050 365 CDD CYCLIN-AtCycD-like-rpt2 197 288 - -
Chna2g00050 365 ProSitePatterns Cyclins signature. 95 126 IPR048258 -
Chna2g00050 365 SMART Cyclin-C-2 197 314 IPR004367 -
Chna2g00050 365 FunFam D6-type cyclin 81 195 - -
Chna2g00050 365 Pfam Cyclin, C-terminal domain 197 295 IPR004367 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00050 K14505 cyclin D3, plant
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Event-related genes

Select Gene_1 Gene_2 Event_name
58500 Chna2g00050 Chna7g02824
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:2022629 Chna4g02426 Chna-Chr4:175054399 dispersed
Chna Chna-Chr7:247731215 Chna2g00050 Chna-Chr2:2022629 transposed
Chna Chna-Chr2:2022629 Chna7g02824 Chna-Chr7:250894846 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna1g01087 . 154 247 Core Cell Cycle gene family AT5G64960 57.447 1.88e-28 109.0
Chna7g02824 ACH 9 282 Core Cell Cycle gene family AT4G34160 51.536 2.11e-99 298.0
Chna6g02867 . 2 312 Core Cell Cycle gene family AT4G37630 34.557 1.10e-41 145.0
Chna4g03525 . 1 253 Core Cell Cycle gene family AT5G10270 82.213 2.16e-149 424.0
Chna6g04268 . 21 366 Core Cell Cycle gene family AT5G10270 45.48 1.28e-100 312.0
Chna6g02522 . 11 315 Core Cell Cycle gene family AT1G20930 85.246 0.0 551.0
Chna8g02048 . 223 858 Core Cell Cycle gene family AT3G12280 63.009 0.0 790.0
Chna9g03649 . 1 430 Core Cell Cycle gene family AT1G76310 55.402 4.08e-154 441.0
Chna4g00685 . 18 357 Core Cell Cycle gene family AT5G10270 52.786 1.38e-115 351.0
Chna6g04641 . 1 220 Core Cell Cycle gene family AT5G48820 40.175 1.93e-38 130.0
Chna7g00543 . 248 326 Core Cell Cycle gene family AT5G10270 61.728 3.94e-28 108.0
Chna6g02750 . 2 309 Core Cell Cycle gene family AT3G54180 81.818 0.0 528.0
Chna8g02120 . 17 395 Core Cell Cycle gene family AT5G10270 42.25 5.05e-94 299.0
Chna5g00025 . 309 343 Core Cell Cycle gene family AT5G63610 51.429 3.08e-06 41.2
Chna00001616g00053 . 12 304 Core Cell Cycle gene family AT1G76540 30.99 8.87e-41 145.0
Chna00039730g00003 . 3 72 Core Cell Cycle gene family AT1G73690 37.143 6.86e-06 42.7
Chna3g01681 . 170 402 Core Cell Cycle gene family AT3G11520 37.6 2.66e-38 135.0
Chna1g00456 . 6 391 Core Cell Cycle gene family AT1G18040 73.127 0.0 557.0
Chna8g01105 . 248 290 Core Cell Cycle gene family AT5G10270 65.116 1.27e-15 71.2
Chna3g02133 . 1 294 Core Cell Cycle gene family AT3G48750 67.347 7.39e-150 421.0
Chna2g03302 . 1 222 Core Cell Cycle gene family AT5G48820 43.421 5.28e-45 147.0
Chna3g02727 . 154 246 Core Cell Cycle gene family AT5G64960 58.065 7.71e-31 116.0
Chna6g03617 . 18 357 Core Cell Cycle gene family AT5G10270 46.334 1.97e-94 295.0
Chna6g02037 . 20 290 Core Cell Cycle gene family AT1G66750 31.013 2.08e-29 119.0
Chna5g03294 . 238 309 Core Cell Cycle gene family AT3G54180 77.778 1.45e-39 131.0
Chna2g03264 . 197 288 Core Cell Cycle gene family AT2G32710 55.435 1.39e-28 107.0
Chna8g02049 . 20 982 Core Cell Cycle gene family AT3G12280 68.68 0.0 1348.0
Chna00003322g00017 . 209 361 Core Cell Cycle gene family AT5G11300 33.974 2.19e-20 92.4
Chna7g02325 . 1 435 Core Cell Cycle gene family AT5G06150 51.435 5.93e-143 414.0
Chna8g00556 ACH 1 425 Core Cell Cycle gene family AT2G17620 58.199 1.61e-151 434.0
Chna7g00048 . 8 478 Core Cell Cycle gene family AT4G28980 52.532 4.42e-168 481.0
Chna4g00782 . 5 310 Core Cell Cycle gene family AT1G20930 46.057 1.17e-90 272.0
Chna00002107g00037 . 1 221 Core Cell Cycle gene family AT5G48820 42.358 6.36e-45 146.0
Chna4g02426 . 18 286 Core Cell Cycle gene family AT4G34160 47.368 1.63e-80 248.0
Chna6g03266 . 197 429 Core Cell Cycle gene family AT1G76310 24.125 4.60e-06 47.8
Chna00006111g00014 . 12 339 Core Cell Cycle gene family AT1G70210 54.913 8.45e-117 340.0
Chna00039044g00015 . 12 304 Core Cell Cycle gene family AT1G76540 30.99 7.91e-41 145.0
Chna00039044g00004 . 2 282 Core Cell Cycle gene family AT3G48750 31.544 5.92e-40 141.0
Chna8g00315 . 18 367 Core Cell Cycle gene family AT5G10270 50.427 5.04e-114 351.0
Chna00040392g00023 . 12 334 Core Cell Cycle gene family AT1G70210 51.952 1.02e-95 287.0
Chna8g01038 . 1 294 Core Cell Cycle gene family AT3G48750 35.548 1.01e-59 192.0
Chna8g00282 . 1 504 Core Cell Cycle gene family AT5G10270 68.571 0.0 640.0
Chna3g02603 . 11 377 Core Cell Cycle gene family AT2G26760 53.5 4.70e-143 411.0
Chna5g00260 . 330 436 Core Cell Cycle gene family AT5G06150 41.284 8.39e-17 77.8
Chna6g01626 . 17 371 Core Cell Cycle gene family AT5G64960 44.231 9.90e-95 301.0
Chna6g04393 . 21 366 Core Cell Cycle gene family AT5G10270 45.48 2.98e-100 311.0
Chna4g01852 . 62 365 Core Cell Cycle gene family AT5G67260 46.835 2.94e-92 278.0
Chna5g03341 . 1 294 Core Cell Cycle gene family AT3G48750 37.248 1.26e-65 211.0
Chna00039031g00024 . 76 331 Core Cell Cycle gene family AT2G22490 45.865 5.84e-65 207.0
Chna5g03549 . 18 364 Core Cell Cycle gene family AT5G10270 48.718 1.25e-104 326.0
Chna6g04196 . 24 224 Core Cell Cycle gene family AT2G26760 45.146 3.88e-49 162.0
Chna00039590g00013 . 18 390 Core Cell Cycle gene family AT5G64960 48.285 8.96e-116 356.0
Chna5g03886 . 1 353 Core Cell Cycle gene family AT5G43080 56.319 1.89e-139 402.0
Chna6g02554 . 20 306 Core Cell Cycle gene family AT1G20930 27.885 3.94e-24 102.0
Chna8g01852 . 18 366 Core Cell Cycle gene family AT5G10270 44.699 3.34e-95 299.0
Chna5g03224 . 3 301 Core Cell Cycle gene family AT3G54180 27.826 2.84e-27 108.0
Chna00001144g00002 . 248 290 Core Cell Cycle gene family AT5G10270 67.442 4.40e-16 72.4
Chna4g01191 ACH 19 304 Core Cell Cycle gene family AT1G76540 24.854 1.32e-25 104.0
Chna6g00484 ACH 1 80 Core Cell Cycle gene family AT2G27970 90.244 7.86e-52 155.0
Chna3g04244 . 1 290 Core Cell Cycle gene family AT3G48750 36.054 2.30e-64 207.0
Chna4g00544 . 76 331 Core Cell Cycle gene family AT2G22490 45.865 5.84e-65 207.0
Chna4g02370 . 44 366 Core Cell Cycle gene family AT5G10270 37.576 2.87e-62 210.0
Chna5g03832 . 138 367 Core Cell Cycle gene family AT5G10270 46.311 4.88e-71 233.0
Chna2g03267 . 99 239 Core Cell Cycle gene family AT5G27620 28.0 2.53e-12 63.9
Chna7g02517 . 20 295 Core Cell Cycle gene family AT1G76540 30.117 2.09e-42 150.0
Chna8g02264 . 307 372 Core Cell Cycle gene family AT5G11300 78.788 7.45e-32 114.0
Chna5g02937 . 331 436 Core Cell Cycle gene family AT5G06150 42.593 3.10e-19 83.6
Chna5g03887 ACH 1 353 Core Cell Cycle gene family AT5G43080 56.749 1.04e-139 399.0
Chna2g04358 . 20 307 Core Cell Cycle gene family AT1G76540 32.192 2.33e-48 163.0
Chna00039427g00009 . 4 172 Core Cell Cycle gene family AT3G48750 31.0 2.08e-13 69.7
Chna5g03209 . 277 357 Core Cell Cycle gene family AT5G10270 34.568 4.26e-10 57.4
Chna4g03526 . 248 505 Core Cell Cycle gene family AT5G10270 63.806 1.29e-99 308.0
Chna8g02112 . 87 302 Core Cell Cycle gene family AT3G54180 38.813 3.58e-47 159.0
Chna3g02792 . 18 213 Core Cell Cycle gene family AT5G10270 46.86 7.35e-52 173.0
Chna9g03900 . 4 237 Core Cell Cycle gene family AT5G02110 30.962 2.11e-28 111.0
Chna4g02072 . 18 252 Core Cell Cycle gene family AT5G64960 49.362 6.45e-75 236.0
Chna00039044g00020 . 43 256 Core Cell Cycle gene family AT4G37630 36.607 2.43e-42 145.0
Chna5g01109 . 17 56 Core Cell Cycle gene family AT5G10270 65.0 2.50e-10 57.0
Chna9g01655 . 18 357 Core Cell Cycle gene family AT5G10270 45.588 1.35e-99 310.0
Chna8g00322 . 33 367 Core Cell Cycle gene family AT5G10270 50.148 1.96e-104 325.0
Chna00005066g00006 . 2 222 Core Cell Cycle gene family AT3G48750 34.956 5.10e-38 134.0
Chna4g01906 . 101 222 Core Cell Cycle gene family AT5G48820 37.398 4.65e-17 72.8
Chna3g01339 . 65 294 Core Cell Cycle gene family AT3G48750 57.812 1.14e-96 286.0
Chna2g02571 . 1 299 Core Cell Cycle gene family AT5G27620 59.866 2.01e-129 370.0
Chna1g01117 . 1 294 Core Cell Cycle gene family AT3G48750 85.714 0.0 535.0
Chna3g00907 ACH 1 80 Core Cell Cycle gene family AT2G27970 90.244 9.29e-53 157.0
Chna00039627g00013 . 24 319 Core Cell Cycle gene family AT2G26760 47.403 1.25e-86 263.0
Chna9g01534 . 86 195 Core Cell Cycle gene family AT1G49620 37.838 1.21e-17 75.5
Chna4g02521 . 76 337 Core Cell Cycle gene family AT2G22490 47.566 2.12e-73 229.0
Chna4g01313 . 18 286 Core Cell Cycle gene family AT4G34160 47.018 1.92e-79 246.0
Chna3g02818 . 2 155 Core Cell Cycle gene family AT4G28980 30.0 1.42e-12 69.3
Chna3g03893 . 18 246 Core Cell Cycle gene family AT5G64960 56.957 6.07e-86 266.0
Chna5g03671 . 4 280 Core Cell Cycle gene family AT5G02110 29.066 1.61e-32 122.0
Chna00001616g00048 . 43 256 Core Cell Cycle gene family AT4G37630 36.607 2.85e-42 145.0
Chna6g02049 . 8 302 Core Cell Cycle gene family AT3G54180 27.059 1.84e-13 69.7
Chna2g00854 . 18 497 Core Cell Cycle gene family AT1G02970 54.065 1.27e-179 511.0
Chna5g03918 . 7 353 Core Cell Cycle gene family AT5G43080 58.166 3.60e-144 410.0
Chna8g00683 . 15 365 Core Cell Cycle gene family AT5G67260 44.11 1.92e-90 274.0
Chna6g02521 . 191 315 Core Cell Cycle gene family AT1G20930 76.8 1.05e-67 208.0
Chna00038199g00046 . 712 836 Core Cell Cycle gene family AT3G12280 44.8 3.95e-26 102.0
Chna7g02519 . 174 246 Core Cell Cycle gene family AT3G48750 40.541 6.75e-15 68.9
Chna5g03255 . 6 434 Core Cell Cycle gene family AT5G25380 45.339 1.59e-125 370.0
Chna2g00952 . 21 647 Core Cell Cycle gene family AT1G16330 42.137 8.06e-152 451.0
Chna2g03803 . 3 354 Core Cell Cycle gene family AT5G43080 43.056 2.84e-87 263.0
Chna8g02284 . 18 363 Core Cell Cycle gene family AT5G10270 46.11 3.21e-96 307.0
Chna2g03265 . 1 287 Core Cell Cycle gene family AT3G48750 37.248 1.63e-61 195.0
Chna2g00050 ACH 47 348 Core Cell Cycle gene family AT5G67260 49.538 8.29e-95 285.0
Chna5g03885 ACH 9 353 Core Cell Cycle gene family AT5G43080 50.432 4.50e-115 337.0
Chna00040906g00003 . 1 353 Core Cell Cycle gene family AT5G43080 57.493 3.37e-146 416.0
Chna4g01325 ACH 1 353 Core Cell Cycle gene family AT5G43080 57.3 2.51e-147 419.0
Chna2g03234 . 165 410 Core Cell Cycle gene family AT3G11520 42.688 8.88e-51 169.0
Chna7g02840 . 82 195 Core Cell Cycle gene family AT1G49620 44.915 1.05e-24 93.2
Chna9g02331 ACH 36 429 Core Cell Cycle gene family AT1G20610 55.33 3.16e-146 419.0
Chna5g01719 . 18 390 Core Cell Cycle gene family AT5G64960 48.285 6.62e-116 356.0
Chna6g02992 ACH 5 459 Core Cell Cycle gene family AT1G44110 53.361 1.83e-165 472.0
Chna2g00751 . 18 376 Core Cell Cycle gene family AT5G10270 47.632 1.94e-107 332.0
Chna1g02632 . 179 409 Core Cell Cycle gene family AT3G11520 32.773 4.82e-29 112.0
Chna6g00220 . 51 149 Core Cell Cycle gene family AT5G10270 37.374 6.84e-14 65.1
Chna3g00532 . 3 200 Core Cell Cycle gene family AT1G73690 29.5 4.51e-18 80.1
Chna2g01940 . 3 72 Core Cell Cycle gene family AT1G73690 37.143 6.86e-06 42.7
Chna7g02785 . 82 291 Core Cell Cycle gene family AT1G70210 45.833 1.12e-54 179.0
Chna8g00168 . 18 470 Core Cell Cycle gene family AT5G63610 62.017 0.0 526.0
Chna2g02884 . 24 377 Core Cell Cycle gene family AT2G26760 50.833 3.06e-122 356.0
Chna6g02923 . 5 459 Core Cell Cycle gene family AT1G44110 53.361 1.89e-165 472.0
Chna00002123g00013 . 712 836 Core Cell Cycle gene family AT3G12280 45.6 7.52e-28 107.0
Chna4g01779 . 133 306 Core Cell Cycle gene family AT1G20930 33.511 2.93e-31 118.0