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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00052 ATGGACGCGGAACCTGTCAAAACCTCGTCTCCTGTTAAAGACGTGGATGTAGAAGCTTCTGTCCCTGTAGACAACGGACACGATAAAGTTGCACAACAACAAGATGCATCTTCCAAGTTCTCGGTTTCTAGCATAAGCACATGGGCAAAAAGTTTGAAACTTCCTCAACCTTTAGGAGGCACACAAGCCGAGTCTTCGTCATCGGAAAACACTGGAAAATCATCTTTTTCGCGTCTGACTAGTGGGCTTGGGTTGAAGTTATCTCCAAAGGCTCCCCAAGAAGTTGATAGTCCCGGCGAATCTCCCAAAACGCCACAAGGTGGTTTCATTGGGACCATCACTAAAGGTTTTGTCGACACTTCTAAAAATGCAGTGAAGGCTGTGCAAGTAAAGGCTCGTCATGTTGTATCACAAAACAAACGAAGATATCAGGAAGGAGGATTTGATTTAGATATGACGTACATCACTGAGAACATAATTGCAATGGGATTCCCTGCTGGTGATATGAGCTCAGGTTTCTTTGGATACGTCGAGGGATTTTACCGTAATCAGATGGAGGAAGTAATCAAGTTCTTTGAAACCAATCACAAGGACAAGTACAAGGTTTACAATCTATGCTCAGAAAGGCTATATGATGCATCACTGTTTGAAGGAAAGGTTGCTTGTTTCCCCTTTGATGATCACAATTGTCCTCCGATTCAACTGATCATATCATTTTGCCATAGTGCCTACTCATGGTTGAAAGAGGACATAGAGAATGTTGTGTTTTTCCCTACAGCTGAGGAATCCATAGACTATTACAACCAAAAAAGATGTGTTGATGGGAAGGGACTTGTTCTCCCGAGTCAAATTAGATACGTCAAGTATTTTGAACGTGTTCTAACATACTTCAATGGTGAAGATCAACCTGGGCGCAGGTGTATGCTTAGAGGAATCCGCCTTCATAGGTGTCCTTATTGGATCAGACCGTCTATTACTGTCTCAGATCATAGTGGCGTTCTTTTCTCTACCAAAAAGCATCCCAGAACCAAGGACCTTTCTCCTGAAGATTTTTGGTTTGCTGCACCTAGAAAGGGTATAATGGTCTTTGCTCTCCCTGGGGAGCCTGGTCTGACAGAATTATCTGGAGATTTTAAGATTCAATTTCATGACCGACAAGGAGACTTCTACTGTTGGCTGAACACGACAATGATGGAGAACAGGACAATCCTAACCACCAATGATCTTGACGGGTTTGACAAGAGGAAACTGCCATCCCCAGGTTTTCAAGTAGAGGTTGTAGTTGTGGACTACGACCCCACAGCTCAACCGAAACCGCAAACTGAAAGTACACCCAAACAAGCCGAGAGCACAACCACAACTCCCGCCCCACCTCCCCCCTCTGATACCACCTCTCCCTTACCTAAAGATTCTGCAACTAGTGAAAAAGATGACGAGGTGTTCTCTGATAACGAGTCAACCGGAACCAATACTAGTTCTAGCAAAATCGAAAATTTATCTGATAAAACCAAGAATATCTCTATATCAAATCCAGGATCCAAGCAGACGGATACCACCAATGAGCCCAAACAGAGCGGCTCGAACCCTATTGGTGAGGTAAGTGATTTTAAGGCAATGGCAGCAGATGCATCTGTGTTCACTTTTGGAGATGACGAAGACTATGAAAGTGACTGA 1674 43.85 MDAEPVKTSSPVKDVDVEASVPVDNGHDKVAQQQDASSKFSVSSISTWAKSLKLPQPLGGTQAESSSSENTGKSSFSRLTSGLGLKLSPKAPQEVDSPGESPKTPQGGFIGTITKGFVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNQMEEVIKFFETNHKDKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGEDQPGRRCMLRGIRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLSPEDFWFAAPRKGIMVFALPGEPGLTELSGDFKIQFHDRQGDFYCWLNTTMMENRTILTTNDLDGFDKRKLPSPGFQVEVVVVDYDPTAQPKPQTESTPKQAESTTTTPAPPPPSDTTSPLPKDSATSEKDDEVFSDNESTGTNTSSSKIENLSDKTKNISISNPGSKQTDTTNEPKQSGSNPIGEVSDFKAMAADASVFTFGDDEDYESD 557
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00052 557 MobiDBLite consensus disorder prediction 434 532 - -
Chna2g00052 557 ProSiteProfiles C2 tensin-type domain profile. 304 431 IPR014020 -
Chna2g00052 557 MobiDBLite consensus disorder prediction 484 531 - -
Chna2g00052 557 Pfam PTEN2, C2 domain 304 432 - -
Chna2g00052 557 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 154 298 IPR029021 -
Chna2g00052 557 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 374 428 IPR035892 -
Chna2g00052 557 MobiDBLite consensus disorder prediction 1 39 - -
Chna2g00052 557 SMART PTEN-C2-2 302 430 IPR014020 -
Chna2g00052 557 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 128 255 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Chna2g00052 557 MobiDBLite consensus disorder prediction 58 82 - -
Chna2g00052 557 Gene3D Protein tyrosine phosphatase superfamily 257 303 IPR029021 -
Chna2g00052 557 Gene3D - 305 431 - -
Chna2g00052 557 MobiDBLite consensus disorder prediction 53 109 - -
Chna2g00052 557 MobiDBLite consensus disorder prediction 436 451 - -
Chna2g00052 557 ProSiteProfiles Phosphatase tensin-type domain profile. 141 297 IPR029023 -
Chna2g00052 557 Gene3D Protein tyrosine phosphatase superfamily 126 256 IPR029021 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00052 K01110 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:2066861 Chna8g00685 Chna-Chr8:71232539 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna2g03219 . 1 315 Protein tyrosine phosphatase (PTP) family AT2G35680 52.381 4.20e-103 302.0
Chna3g02189 . 68 139 Protein tyrosine phosphatase (PTP) family AT3G52180 60.0 1.10e-27 102.0
Chna8g00685 . 50 611 Protein tyrosine phosphatase (PTP) family AT3G19420 61.404 0.0 708.0
Chna6g02635 ACH 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 64.846 0.0 1107.0
Chna00000208g00007 . 55 215 Protein tyrosine phosphatase (PTP) family AT1G05000 78.395 7.33e-95 273.0
Chna2g03898 . 353 445 Protein tyrosine phosphatase (PTP) family AT3G10550 79.57 9.36e-45 155.0
Chna5g00308 . 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.455 0.0 717.0
Chna00003420g00007 . 153 516 Protein tyrosine phosphatase (PTP) family AT5G01290 47.98 2.67e-109 334.0
Chna1g02058 . 229 283 Protein tyrosine phosphatase (PTP) family AT3G09100 74.545 1.42e-23 99.4
Chna4g02548 ACH 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 58.824 7.30e-156 442.0
Chna7g03741 ACH 809 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 62.241 2.83e-177 556.0
Chna8g02193 . 72 483 Protein tyrosine phosphatase (PTP) family AT3G55270 55.556 3.28e-161 482.0
Chna6g00293 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 6.15e-07 48.9
Chna7g03738 . 896 1279 Protein tyrosine phosphatase (PTP) family AT5G58160 64.631 5.85e-163 498.0
Chna1g02673 . 65 653 Protein tyrosine phosphatase (PTP) family AT5G01290 54.739 0.0 632.0
Chna8g00823 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 56.281 3.29e-159 452.0
Chna9g00542 . 64 282 Protein tyrosine phosphatase (PTP) family AT3G10940 82.648 4.17e-141 396.0
Chna9g01779 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.932 0.0 797.0
Chna7g00130 . 29 207 Protein tyrosine phosphatase (PTP) family AT5G56610 73.184 2.81e-97 283.0
Chna2g00052 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.084 0.0 757.0
Chna4g00671 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 61.983 0.0 1085.0
Chna3g00997 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 60.36 3.32e-90 264.0
Chna00004003g00115 . 75 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.235 7.30e-07 48.5
Chna8g02146 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 56.965 1.20e-161 482.0
Chna5g03915 . 57 359 Protein tyrosine phosphatase (PTP) family AT3G09100 29.412 5.47e-27 112.0
Chna3g01359 . 86 139 Protein tyrosine phosphatase (PTP) family AT3G52180 81.818 1.84e-27 100.0
Chna3g02341 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.913 2.29e-116 337.0
Chna7g03900 . 86 344 Protein tyrosine phosphatase (PTP) family AT5G58160 48.077 5.06e-74 251.0
Chna7g03608 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 58.235 1.96e-70 211.0
Chna00040566g00007 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 2.46e-06 46.6
Chna2g04666 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 60.588 8.45e-74 220.0
Chna3g02690 . 70 133 Protein tyrosine phosphatase (PTP) family AT3G52180 79.688 6.64e-31 114.0
Chna5g02006 ACH 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.212 0.0 715.0
Chna3g01360 . 147 231 Protein tyrosine phosphatase (PTP) family AT3G52180 38.372 8.74e-12 57.0
Chna7g02014 . 65 339 Protein tyrosine phosphatase (PTP) family AT1G71860 42.657 5.97e-70 219.0
Chna3g03965 . 80 231 Protein tyrosine phosphatase (PTP) family AT3G52180 53.846 3.62e-48 158.0
Chna7g02256 . 66 186 Protein tyrosine phosphatase (PTP) family AT3G23610 39.669 2.71e-19 83.2
Chna2g00444 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 58.028 0.0 773.0
Chna7g00718 ACH 812 1320 Protein tyrosine phosphatase (PTP) family AT5G58160 59.687 0.0 570.0
Chna9g01264 ACH 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 56.589 1.88e-150 428.0
Chna9g01049 ACH 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 66.806 0.0 659.0
Chna5g01074 . 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 63.298 1.40e-82 242.0
Chna9g01029 ACH 1 473 Protein tyrosine phosphatase (PTP) family AT3G55270 66.597 0.0 658.0
Chna5g03415 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 50.165 4.07e-106 308.0
Chna00039193g00013 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 54.61 2.15e-97 285.0
Chna1g02758 . 45 644 Protein tyrosine phosphatase (PTP) family AT5G01290 52.358 0.0 603.0
Chna3g03802 . 265 323 Protein tyrosine phosphatase (PTP) family AT3G52180 40.984 9.84e-07 48.9
Chna00003118g00003 . 40 133 Protein tyrosine phosphatase (PTP) family AT3G52180 65.957 5.79e-34 119.0
Chna00010352g00008 . 74 543 Protein tyrosine phosphatase (PTP) family AT5G01290 41.235 3.52e-106 334.0
Chna9g03352 . 6 186 Protein tyrosine phosphatase (PTP) family AT3G02800 68.508 4.96e-91 263.0
Chna1g02246 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 52.958 0.0 684.0
Chna8g02217 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 33.333 4.66e-21 86.7
Chna7g01893 . 54 285 Protein tyrosine phosphatase (PTP) family AT3G09100 57.082 5.34e-89 277.0
Chna00006068g00001 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 2.65e-06 46.6
Chna4g03257 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 3.70e-86 253.0
Chna4g02123 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 27.976 1.58e-09 54.3
Chna9g01279 ACH 384 840 Protein tyrosine phosphatase (PTP) family AT3G10550 57.692 0.0 548.0
Chna6g01474 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 36.145 3.10e-23 92.4