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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00100 ATGGCAATACCTAGAGACACAAGCCCACCTTTGTCTGCTTTGGATGTTAAGAGAATGGCTTTGGAGATCAAGAAAAAATATGCTCAGAAAAAAACTACTAACACAACCCCCCCTTTGTCTTCCAAGTGGAAACAGAGAAAGGCAGTGGAGATTAAGAAAAAGTCGTTACAGAAAAACTCTACAAGTCCTGCTAAGCAAACGGTTGAAGCGTCGAAACAGAAAAAGGCAATTGAGATCAAGGACAAATCGTTACAGAAAAAAGCTACAAATCCTACTAAGCAAACGGTTGAAGCGTTGCCTGATAACTTACCATTGAAGGCATGTCGTGATATTTTACGTGGTTCAATAGTGAGCTATGACCCGAAGACAGCTGCTGCAGCTCAACCTCCTGATTCCCAAGCCAAGTCTGCTGCTATCGAGCGTGCCAATGAGGTTCAAGCAAGCCTCCCATCCGAGTTACCTAGTTTTGTTAAGGCTATGCTTCCATCACATGTTGCTGGTGGCTTTTGGCTGGGTCTTACCAAGCAATTCTGTGATGCAAATCTGCCAAAGCATGATGAAACGATTGTGTTGGTGGATGAAGATGGTCAAGAATTCAACACTAAGTTTCTCGTTGGCAAAATTGGATTGAGCGGTGGTTGGAGAGGGTTCTCAATTGCTCACAAATTACTTGAGGGAGATGTTTTAGTTTTTCAATTGATTGAGCATTGGAAATTTAAGGTCTACATTGTAAGGGTACATGGTCTAAATGAAATCGATGGAGCTCTTGGCCTTCTTAACTTAATTCCAAGCGGCATGACTGTCACGAATGTTTACCAACGTAAAAAGAAAAAGAACTCGGTGAATAGTCAGAAAACCGTAGATATGGATATAGATTTGCATCAAGAAAATGTTCAAGAGAATGATTTAGTGGTGTATGATCAATCAGTAGATGACAGTGAGTGTGCAGATGCACCAGTTTCTGAAGGACTCAGATTCTCACGATCCGTTATTGAGTTCAAGGATATAAAGGGTATCGACGATTTCAATATCGTCGTGGATACTTTAGTCATAGATTCAGAAATACCAAAACACTTTCTGATCAAATACTATGATTTATGTCGGAGTCAAATGACATATCTTCAGGAAAACCTCCTCAAGGGTCTCAATGTTAAACTAGCGGTTGGGATAATCCTTGAAACTGTAACCATTGCTGACGCCATCAGAGCTTGTAAAGTCACCATTACTCGTGACGATATTGAAACATGGGATAAAACCTTAAAGGCCTTTGAAGAGATAGGCATGAAAGTTGGGTTTTTAAGAGCCCGGATCAGTAAGCTTAAGGGACTATTGTTTGAATCGAACGAGCTCTTGGAAGCAAAGATAAATGAACAAGTGAAAGCTGAAGAGGAGATGAGAGTCATTAAAGAAAAACTTAATGACGTAAGAGGGGTGATCAAGAATCTTGATGTTGAAATCGAAATTCTGAAGCTAAAAGGCCAGAAGCTGGACACAATCTTTCATAAAGAGGCTAACGCACCTTGGTGA 1527 40.6 MAIPRDTSPPLSALDVKRMALEIKKKYAQKKTTNTTPPLSSKWKQRKAVEIKKKSLQKNSTSPAKQTVEASKQKKAIEIKDKSLQKKATNPTKQTVEALPDNLPLKACRDILRGSIVSYDPKTAAAAQPPDSQAKSAAIERANEVQASLPSELPSFVKAMLPSHVAGGFWLGLTKQFCDANLPKHDETIVLVDEDGQEFNTKFLVGKIGLSGGWRGFSIAHKLLEGDVLVFQLIEHWKFKVYIVRVHGLNEIDGALGLLNLIPSGMTVTNVYQRKKKKNSVNSQKTVDMDIDLHQENVQENDLVVYDQSVDDSECADAPVSEGLRFSRSVIEFKDIKGIDDFNIVVDTLVIDSEIPKHFLIKYYDLCRSQMTYLQENLLKGLNVKLAVGIILETVTIADAIRACKVTITRDDIETWDKTLKAFEEIGMKVGFLRARISKLKGLLFESNELLEAKINEQVKAEEEMRVIKEKLNDVRGVIKNLDVEIEILKLKGQKLDTIFHKEANAPW 508
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00100 508 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 21 247 IPR044837 -
Chna2g00100 508 CDD B3-DNA 154 245 IPR003340 GO:0003677(InterPro)
Chna2g00100 508 SMART B3-2 156 247 IPR003340 GO:0003677(InterPro)
Chna2g00100 508 MobiDBLite consensus disorder prediction 27 75 - -
Chna2g00100 508 MobiDBLite consensus disorder prediction 55 69 - -
Chna2g00100 508 Pfam B3 DNA binding domain 156 245 IPR003340 GO:0003677(InterPro)
Chna2g00100 508 ProSiteProfiles B3 DNA-binding domain profile. 156 247 IPR003340 GO:0003677(InterPro)
Chna2g00100 508 Coils Coil 451 471 - -
Chna2g00100 508 Gene3D - 132 248 IPR015300 -
Chna2g00100 508 SUPERFAMILY DNA-binding pseudobarrel domain 149 246 IPR015300 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00100 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58505 Chna2g00100 Chna5g01267
58506 Chna2g00100 Chna7g02836
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:5319245 Chna2g02841 Chna-Chr2:318915896 dispersed
Chna Chna-Chr2:5049245 Chna2g00100 Chna-Chr2:5319245 proximal
Chna Chna-Chr2:5319245 Chna2g00102 Chna-Chr2:5353084 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna2g04259 . 15 464 B3 DNA Binding Superfamily AT1G30330 82.653 0.0 806.0
Chna8g01498 . 19 111 B3 DNA Binding Superfamily AT3G18960 30.526 1.77e-07 48.9
Chna6g00391 . 62 772 B3 DNA Binding Superfamily AT5G60450 52.016 0.0 675.0
Chna7g00252 . 9 477 B3 DNA Binding Superfamily AT1G19220 78.39 0.0 739.0
Chna8g00719 ACH 107 215 B3 DNA Binding Superfamily AT3G19184 45.872 1.95e-27 103.0
Chna00038907g00037 . 171 314 B3 DNA Binding Superfamily AT1G05930 30.921 3.28e-11 60.1
Chna00002696g00006 . 1 495 B3 DNA Binding Superfamily AT5G20730 62.868 0.0 590.0
Chna00038749g00048 . 431 711 B3 DNA Binding Superfamily AT3G24650 54.392 2.55e-88 290.0
Chna2g01486 . 2 639 B3 DNA Binding Superfamily AT1G59750 66.517 0.0 867.0
Chna6g04156 . 348 430 B3 DNA Binding Superfamily AT5G62000 66.279 4.34e-31 117.0
Chna5g04823 . 167 289 B3 DNA Binding Superfamily AT1G05930 26.718 3.99e-06 43.5
Chna5g03961 . 1 229 B3 DNA Binding Superfamily AT3G19184 53.165 2.74e-71 218.0
Chna00038639g00017 . 167 289 B3 DNA Binding Superfamily AT1G05930 30.233 1.43e-10 59.7
Chna3g03880 . 514 562 B3 DNA Binding Superfamily AT4G32010 42.308 9.34e-07 51.6
Chna3g03106 ACH 7 613 B3 DNA Binding Superfamily AT4G23980 49.139 0.0 543.0
Chna00001175g00171 . 8 743 B3 DNA Binding Superfamily AT2G30470 44.645 0.0 620.0
Chna5g03171 ACH 19 592 B3 DNA Binding Superfamily AT3G61830 45.983 1.86e-158 461.0
Chna7g03692 ACH 5 488 B3 DNA Binding Superfamily AT1G19220 67.8 0.0 654.0
Chna5g05179 . 1 616 B3 DNA Binding Superfamily AT4G23980 59.322 0.0 681.0
Chna2g00100 ACH 22 205 B3 DNA Binding Superfamily AT5G42700 38.967 1.69e-40 143.0
Chna5g05089 . 13 669 B3 DNA Binding Superfamily AT4G30080 55.344 0.0 686.0
Chna8g00531 ACH 1 801 B3 DNA Binding Superfamily AT5G37020 58.724 0.0 839.0
Chna2g00102 . 112 193 B3 DNA Binding Superfamily AT3G19184 59.756 1.16e-27 109.0
Chna00005980g00022 . 286 520 B3 DNA Binding Superfamily AT4G23980 37.302 7.94e-35 131.0
Chna00038907g00018 . 156 289 B3 DNA Binding Superfamily AT1G05930 32.857 1.35e-11 62.0
Chna4g01902 . 92 162 B3 DNA Binding Superfamily AT5G42700 38.961 1.68e-11 61.2
Chna5g00591 . 323 427 B3 DNA Binding Superfamily AT4G21550 43.519 9.73e-22 92.0
Chna5g01919 . 1 668 B3 DNA Binding Superfamily AT4G30080 52.586 0.0 640.0
Chna8g02497 ACH 12 383 B3 DNA Binding Superfamily AT2G46530 70.0 0.0 545.0
Chna4g03684 . 148 294 B3 DNA Binding Superfamily AT1G05930 33.117 1.25e-13 66.6
Chna4g03021 . 92 163 B3 DNA Binding Superfamily AT5G42700 38.462 4.65e-11 60.1
Chna7g01365 . 148 294 B3 DNA Binding Superfamily AT1G05930 32.468 1.24e-13 68.9
Chna2g02841 . 113 260 B3 DNA Binding Superfamily AT3G19184 46.309 1.33e-35 130.0
Chna7g02059 . 154 293 B3 DNA Binding Superfamily AT4G30080 59.859 4.25e-48 161.0
Chna9g03274 . 32 900 B3 DNA Binding Superfamily AT1G19850 60.517 0.0 989.0
Chna00001175g00152 . 4 217 B3 DNA Binding Superfamily AT5G58280 51.339 5.37e-68 213.0
Chna9g00089 . 294 517 B3 DNA Binding Superfamily AT4G00260 25.882 1.13e-10 61.2
Chna5g03293 . 164 289 B3 DNA Binding Superfamily AT1G05930 32.308 5.29e-14 68.6
Chna8g01060 . 45 160 B3 DNA Binding Superfamily AT3G26790 50.0 3.63e-28 108.0
Chna3g01903 . 173 289 B3 DNA Binding Superfamily AT1G05930 33.884 6.25e-13 65.5
Chna6g03759 . 4 136 B3 DNA Binding Superfamily AT5G66980 38.06 9.18e-24 92.8
Chna00040081g00011 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.485 0.0 745.0
Chna9g02082 . 62 772 B3 DNA Binding Superfamily AT5G60450 54.485 0.0 745.0
Chna5g03963 . 1 229 B3 DNA Binding Superfamily AT3G19184 42.489 1.63e-42 143.0
Chna7g02837 . 75 199 B3 DNA Binding Superfamily AT5G42700 42.4 5.81e-29 106.0
Chna7g02012 . 1 672 B3 DNA Binding Superfamily AT4G32010 44.0 0.0 545.0
Chna5g00595 . 33 110 B3 DNA Binding Superfamily AT4G21550 48.718 5.59e-20 88.6
Chna9g01175 . 1 363 B3 DNA Binding Superfamily AT4G30080 63.926 1.92e-161 465.0
Chna4g03020 . 92 162 B3 DNA Binding Superfamily AT5G42700 38.961 1.96e-11 60.8
Chna00038907g00041 . 164 317 B3 DNA Binding Superfamily AT1G05930 31.707 2.98e-12 61.2
Chna00038907g00026 . 142 289 B3 DNA Binding Superfamily AT1G05930 29.221 3.34e-11 61.6
Chna00039278g00038 . 171 314 B3 DNA Binding Superfamily AT1G05930 31.579 1.03e-10 58.9
Chna9g00070 . 294 517 B3 DNA Binding Superfamily AT4G00260 25.882 1.13e-10 61.2
Chna1g00368 . 7 777 B3 DNA Binding Superfamily AT4G32010 48.87 0.0 707.0
Chna2g04530 . 234 660 B3 DNA Binding Superfamily AT4G32010 38.761 4.54e-79 269.0
Chna2g04392 ACH 1 590 B3 DNA Binding Superfamily AT2G33860 50.247 0.0 530.0
Chna00000128g00009 . 32 140 B3 DNA Binding Superfamily AT1G19850 78.571 1.13e-53 178.0
Chna5g03618 . 225 345 B3 DNA Binding Superfamily AT4G30080 45.802 1.11e-24 98.2
Chna7g02836 ACH 5 225 B3 DNA Binding Superfamily AT3G19184 60.793 5.56e-81 242.0
Chna5g00594 . 33 110 B3 DNA Binding Superfamily AT4G21550 48.718 1.59e-20 86.3
Chna1g01488 ACH 1 483 B3 DNA Binding Superfamily AT2G33860 49.4 5.53e-152 448.0
Chna5g04204 ACH 137 664 B3 DNA Binding Superfamily AT5G62000 42.777 1.42e-113 354.0
Chna9g02396 ACH 14 773 B3 DNA Binding Superfamily AT5G37020 63.782 0.0 939.0
Chna6g03762 . 266 398 B3 DNA Binding Superfamily AT2G30470 42.857 3.39e-29 113.0
Chna00039278g00033 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.835 2.09e-11 61.6
Chna6g03631 ACH 53 850 B3 DNA Binding Superfamily AT5G62000 60.123 0.0 944.0
Chna5g00592 . 282 385 B3 DNA Binding Superfamily AT4G32010 44.762 1.05e-20 88.6
Chna4g01899 ACH 115 253 B3 DNA Binding Superfamily AT3G19184 41.727 1.25e-34 130.0
Chna5g02321 . 170 318 B3 DNA Binding Superfamily AT1G05930 32.051 2.04e-14 69.7
Chna4g02635 . 268 333 B3 DNA Binding Superfamily AT1G59750 72.727 4.04e-26 102.0
Chna00038907g00039 . 164 289 B3 DNA Binding Superfamily AT1G05930 33.835 2.70e-11 61.2
Chna9g03594 . 215 232 B3 DNA Binding Superfamily AT1G20600 100.0 7.77e-06 40.8
Chna4g02578 . 1 354 B3 DNA Binding Superfamily AT4G30080 68.333 2.34e-171 491.0
Chna00039278g00032 . 164 317 B3 DNA Binding Superfamily AT1G05930 28.481 5.41e-12 60.5
Chna00038639g00012 . 156 289 B3 DNA Binding Superfamily AT1G05930 34.286 2.66e-14 69.7
Chna5g04904 . 167 289 B3 DNA Binding Superfamily AT1G05930 28.244 1.08e-07 48.1
Chna9g00523 . 1 220 B3 DNA Binding Superfamily AT3G19184 46.696 1.42e-47 156.0
Chna4g01904 ACH 43 205 B3 DNA Binding Superfamily AT5G42700 37.952 2.41e-34 120.0
Chna6g03039 . 1011 1164 B3 DNA Binding Superfamily AT5G20730 56.41 2.23e-45 155.0
Chna9g03025 . 45 212 B3 DNA Binding Superfamily AT3G26790 40.476 1.04e-36 130.0
Chna00039278g00039 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.824 6.12e-13 65.1
Chna00040081g00040 . 2 687 B3 DNA Binding Superfamily AT2G28350 50.771 0.0 624.0
Chna6g00434 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.742 0.0 660.0
Chna8g02468 ACH 1 616 B3 DNA Binding Superfamily AT4G23980 59.322 0.0 682.0
Chna00000128g00010 . 192 900 B3 DNA Binding Superfamily AT1G19850 56.516 0.0 730.0
Chna6g02599 . 1 593 B3 DNA Binding Superfamily AT4G30080 57.143 0.0 642.0
Chna5g00593 . 321 427 B3 DNA Binding Superfamily AT4G21550 42.727 6.23e-24 98.2
Chna5g03962 . 1 220 B3 DNA Binding Superfamily AT3G19184 49.115 7.71e-54 172.0
Chna9g01174 . 391 670 B3 DNA Binding Superfamily AT4G30080 42.807 5.80e-57 191.0
Chna00038907g00036 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.061 2.62e-12 63.2
Chna2g00096 . 33 199 B3 DNA Binding Superfamily AT5G42700 35.714 1.41e-26 105.0
Chna5g04936 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.008 2.62e-10 55.8
Chna5g02320 . 170 289 B3 DNA Binding Superfamily AT1G05930 37.302 9.08e-17 76.3
Chna7g00709 ACH 14 104 B3 DNA Binding Superfamily AT5G20730 80.22 9.88e-47 160.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chna B3 3.4e-15 CL0405 TF B3