AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00141 ATGGCACCTGTAAAACCCACAAAACACACAATCTCCCAACAAGCCTTCGACGAAATGGTCCAGGAGAACATAACCGATCTGGGCATGGACCCACCCGAAGCCTTAGCAGACGCAATCGAAACCCTGACTTTACAAAACGTAGATCTCTCCGGTATCATCACTTCCACACTTCCAGGACAACCCAACCCAGTCATCCAATCACTTGACAGAATCAAGGATGAGGTTTTGAAGAAAACCCATGATGATGTTGATGAGTTGGTTTTGAGTGAAATGGTGGATGAGTTGGTGGGTTTGTGTGGAGAGGGGGAGGGGGAGGGGAATGTGGCGGTTTGTGGGAGGAATGGGGTGGTTGAGTTGATGTGTGAGGTTTGTGGGGGGATGGGGGTGGGGGTGAGGGTGCGGGTTTCGGCGTTGAATGCTTTGGCTTTGTTTGTTTGTGATATTCAAAGTACGGAAATATTTCGGAAGAGTGGAGGGCCGAAAATGGTGGTCGGTATTTTGAATGATGGAATTGAAAATGTGAATGTATTGAATAGTGGTTTTGCAGTTGTTGCTGCGGCTGCAACTGGTAATGAAGTTATTAAGGAATCTTTTGTCGAGTTACATATACATGAGTTAATGGTTAACGTGATGAGGAAGCATGGTAAAGGGAGCATCCCAAGTCTATATGATGCTATTCGAGTGCTTTTGGCAGCTGATGATAACCGAGTAGTGGCTTCACAAGTTTTTGGCTATGCTCGACAATTTGCGAAAATTGGAATTGCGGAAGCTCTTGTGGAGTCACTTAAAGATGGGCTTAGCTCGCCAAGTTTGGTATCTGCAACTATTGCACTAAAGGCCATTTCAGTGAATGATGACATATGCAGATCAGTTGCTGAAAATGGTGGTATAGATTCATTACTTGTTTGTATTGATGACGCTGGTTTACAGGGGAACAGCATTGTGGCTAAAGCTTGCTGCTCCCTATTATCGAAGTTGGCAGGAAGTGACTTTAATAAGAGTGCTATTGTTGAAAGGGGAGGGTTGAATAGGCTCATCACACTTTGTAGCAGACTTGCTGACGATCCTTCTGTCATCCAAGAGGTGATGACTATCGTATGTACACTCTGCCTGCGATTGCCAGGAAATGCAACCTTAGCCATAGAAGCAGGAGCAGGAGATCTTGCAATCCAATCTATGCAGAACTTCCCTGAGGCATATCAGCTGCAGAAAAACTCTTGTCTCATGATCCGTAATCTTGTTGCCAGGAATCCAGAGAACAGGACTCTTTTGTTAGGTAATGGTATTGAGAAGATCATACGTAAGGCCAAAGAAAACCACAAAAGCTGCAAAGACGCAGCTACCGCTGCTCTTAGGGACTTGGGGCTTGATAACTACAACTCGTAG 1386 45.24 MAPVKPTKHTISQQAFDEMVQENITDLGMDPPEALADAIETLTLQNVDLSGIITSTLPGQPNPVIQSLDRIKDEVLKKTHDDVDELVLSEMVDELVGLCGEGEGEGNVAVCGRNGVVELMCEVCGGMGVGVRVRVSALNALALFVCDIQSTEIFRKSGGPKMVVGILNDGIENVNVLNSGFAVVAAAATGNEVIKESFVELHIHELMVNVMRKHGKGSIPSLYDAIRVLLAADDNRVVASQVFGYARQFAKIGIAEALVESLKDGLSSPSLVSATIALKAISVNDDICRSVAENGGIDSLLVCIDDAGLQGNSIVAKACCSLLSKLAGSDFNKSAIVERGGLNRLITLCSRLADDPSVIQEVMTIVCTLCLRLPGNATLAIEAGAGDLAIQSMQNFPEAYQLQKNSCLMIRNLVARNPENRTLLLGNGIEKIIRKAKENHKSCKDAATAALRDLGLDNYNS 461
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00141 461 SUPERFAMILY ARM repeat 110 454 IPR016024 -
Chna2g00141 461 Gene3D - 74 461 IPR011989 -
Chna2g00141 461 PANTHER UNCHARACTERIZED 6 55 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00141 K24166 armadillo repeat-containing protein 6
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:8704163 Chna6g01555 Chna-Chr6:88644899 dispersed