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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00144 CGACATAATTCCATTCTGAATCTTCACGAAAACATCGTTATCTATTTGGACCACATTATGAATAAGAAGAATATTATTTTCGCCTTCTTAGTTTCATGTTCATTACTTTTAGCTAATGGCCAGCTTGATTACTACTATTATTCGTCTTGTCCTAACTTGCAAATGATCGTGAAATATGGTGTATGGGCAGCTATGAAAGACGACACTAGGATAGCTGCGTCTCTTCTCCGTCTTCATTTCCATGATTGTTTTGTTAATGGTTGTGACGGTTCTATCCTTCTGGATGATACTAAAACCTTTAAAGGGGAACAAAGTGCAGGCCCAAACATTAATTCGATCCATGGGCGAGACGGGGTGGCAGCAAACCTGAAAGCAGCAAACACGAACCTGCCAGCACCCTTTGAGCCACTAGCAAACATCACAGCCAAGTTTGCAGCAGTAGGTCTTGATATAAGGGACGTTGTGCTTATAAATAGTCGACATAATTCCATTCTGAATCTTCACGAAAACATTGTAATCTATTTGGACCACACTATGAATCAGAAGAATATTATTATCGTTTTCTTAGTTTCATGTTCATTACTTTTAGCAAATGGCCAGCTTGATTACTACTATTATTCGTCTTGTCCTAACTTGCAAATGATCGTGAAATATGGTGTATGGGCAGCTATGAAAAACGACACTAGGATAGCTGCGTCTCTTCTCCGTCTTCATTTCCATGATTGTTTTGTTAATGGTTGTGACGGTTCTATCCTTCTGGACGATACTAAAACATTCAAAGGGGAACAAAGTGCAGGCCCGAACATTAATTCGGTCCGTGGGTATGAAGTCATAGACAACATTAAAGCTGATGTGGAACGCGCTTGCCCATCTACTGTGTCATGTGTTGACATATTGACTCTTGCAGCTAGGGAAGCCGTTGTCCTGGCCAGCGGGCGGGTCAAAACAAATTTAGGTGGAAACGGGAGTACAAGCAGGCGAGACGGGGTGACAGCAAACCTGAAAGCAGCAAACACGAACCTGCCAGCACCCTTTGAGCCACTAGCAAACATCACAGCCAAGTTTGCAGCAGTAGGTCTTGATATAAGGGACGTTGTGGTTCTATCAGGTGCACACACTATTGGGCTAGCTCAATGCTTCACATTTAAAAACCGCTTATTTGACTTTAAAGGGACCGGTCAACCTGACCCGAACCTTGATACATATCTAGCCACAAGCTTAAAAACCTCATGTCCTAATGTCGATAGCTCAAACTCAAACCTTAACTCACTAGACTTGGTGACAACGTATAAATTTGATAACGCATATTATAAGAACTTGGTGAATAATGCTGGACTACTTGAATCTGATCAAGCTTTGATGGGTCATCCATTGACTGCTTCTATGGTCAAAGATTATAGTATGTACCCATATCTTTTTTACAAGGATTTTGCTACTTCAATGGTGAAGCTCGGTAATATCGGCGTAATCACAGGGCAAAATGGGCAAGTTAGGAAGAAATGCGGTGAAGTAAATCGTTAA 1521 41.42 RHNSILNLHENIVIYLDHIMNKKNIIFAFLVSCSLLLANGQLDYYYYSSCPNLQMIVKYGVWAAMKDDTRIAASLLRLHFHDCFVNGCDGSILLDDTKTFKGEQSAGPNINSIHGRDGVAANLKAANTNLPAPFEPLANITAKFAAVGLDIRDVVLINSRHNSILNLHENIVIYLDHTMNQKNIIIVFLVSCSLLLANGQLDYYYYSSCPNLQMIVKYGVWAAMKNDTRIAASLLRLHFHDCFVNGCDGSILLDDTKTFKGEQSAGPNINSVRGYEVIDNIKADVERACPSTVSCVDILTLAAREAVVLASGRVKTNLGGNGSTSRRDGVTANLKAANTNLPAPFEPLANITAKFAAVGLDIRDVVVLSGAHTIGLAQCFTFKNRLFDFKGTGQPDPNLDTYLATSLKTSCPNVDSSNSNLNSLDLVTTYKFDNAYYKNLVNNAGLLESDQALMGHPLTASMVKDYSMYPYLFYKDFATSMVKLGNIGVITGQNGQVRKKCGEVNR 506
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00144 506 ProSiteProfiles Plant heme peroxidase family profile. 39 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 ProSitePatterns Peroxidases active site signature. 72 83 IPR019794 GO:0004601(InterPro)
Chna2g00144 506 CDD secretory-peroxidase 200 504 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Chna2g00144 506 ProSitePatterns Peroxidases active site signature. 231 242 IPR019794 GO:0004601(InterPro)
Chna2g00144 506 SUPERFAMILY Heme-dependent peroxidases 45 158 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 Gene3D - 204 505 - -
Chna2g00144 506 SUPERFAMILY Heme-dependent peroxidases 203 505 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 ProSitePatterns Peroxidases proximal heme-ligand signature. 364 374 IPR019793 -
Chna2g00144 506 PANTHER PEROXIDASE 72-RELATED 190 503 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 Pfam Peroxidase 217 467 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 Pfam Peroxidase 58 116 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 Gene3D Peroxidase, domain 2 342 484 - -
Chna2g00144 506 PRINTS Haem peroxidase superfamily signature 425 440 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Haem peroxidase superfamily signature 364 379 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Haem peroxidase superfamily signature 231 245 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Haem peroxidase superfamily signature 293 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 273 286 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 292 302 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 423 438 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 209 228 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 233 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 479 492 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 363 375 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 PRINTS Plant peroxidase signature 439 456 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 Gene3D - 42 146 - -
Chna2g00144 506 ProSiteProfiles Plant heme peroxidase family profile. 198 505 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Chna2g00144 506 FunFam Peroxidase 342 484 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00144 K00430 peroxidase [EC:1.11.1.7]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:8910987 Chna8g00739 Chna-Chr8:75911258 dispersed
Chna Chna-Chr2:8910987 Chna8g01079 Chna-Chr8:102793099 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna2g02477 . 5 321 Peroxidase gene family AT1G14550 55.28 2.67e-121 349.0
Chna6g04271 . 17 340 Peroxidase gene family AT1G71695 62.654 1.43e-151 429.0
Chna1g00315 . 30 324 Peroxidase gene family AT5G05340 57.912 7.34e-120 347.0
Chna1g00313 . 30 324 Peroxidase gene family AT5G05340 57.432 1.85e-112 340.0
Chna7g03321 . 142 334 Peroxidase gene family AT5G66390 75.13 2.61e-109 315.0
Chna2g01625 . 230 283 Peroxidase gene family AT5G42180 50.0 1.50e-11 59.7
Chna6g00618 . 4 323 Peroxidase gene family AT5G22410 50.462 6.73e-105 309.0
Chna6g04270 . 6 340 Peroxidase gene family AT1G71695 60.597 1.08e-151 429.0
Chna4g03479 . 22 316 Peroxidase gene family AT5G42180 73.559 9.70e-167 464.0
Chna6g04275 . 10 348 Peroxidase gene family AT1G71695 51.014 5.89e-120 348.0
Chna8g01010 . 10 330 Peroxidase gene family AT5G14130 66.149 1.64e-151 426.0
Chna6g00616 . 5 323 Peroxidase gene family AT5G22410 51.863 3.53e-111 325.0
Chna6g01100 . 72 321 Peroxidase gene family AT3G01190 63.889 1.64e-116 338.0
Chna2g02474 . 3 315 Peroxidase gene family AT1G14540 57.911 9.82e-122 350.0
Chna6g02940 . 108 311 Peroxidase gene family AT4G31760 29.302 2.04e-17 81.3
Chna6g01104 . 170 317 Peroxidase gene family AT3G01190 46.622 2.14e-42 142.0
Chna6g04272 . 39 346 Peroxidase gene family AT1G71695 61.039 4.71e-142 405.0
Chna2g01835 . 134 202 Peroxidase gene family AT4G16270 50.725 1.43e-15 67.4
Chna7g02028 . 28 320 Peroxidase gene family AT5G05340 62.925 1.03e-136 389.0
Chna9g01746 . 21 328 Peroxidase gene family AT5G40150 57.827 2.29e-137 391.0
Chna2g01453 . 9 328 Peroxidase gene family AT5G64120 57.231 1.76e-124 358.0
Chna2g02880 . 118 309 Peroxidase gene family AT4G31760 29.146 1.06e-14 70.9
Chna00038355g00027 . 12 354 Peroxidase gene family AT1G71695 61.159 5.61e-156 441.0
Chna8g01709 . 15 326 Peroxidase gene family AT1G05260 70.159 1.28e-164 460.0
Chna7g01053 . 9 319 Peroxidase gene family AT5G39580 58.228 7.53e-124 356.0
Chna1g00314 . 30 324 Peroxidase gene family AT5G05340 55.405 7.05e-115 333.0
Chna4g01379 . 1 272 Peroxidase gene family AT5G66390 68.116 2.47e-132 376.0
Chna7g02671 . 3 328 Peroxidase gene family AT5G64120 56.098 2.72e-122 353.0
Chna5g02089 . 249 328 Peroxidase gene family AT5G40150 52.5 5.08e-21 85.9
Chna5g02260 . 25 324 Peroxidase gene family AT5G05340 74.751 1.78e-167 466.0
Chna7g03835 . 9 323 Peroxidase gene family AT2G18980 75.079 7.80e-178 493.0
Chna7g00462 . 9 328 Peroxidase gene family AT5G64120 56.615 8.31e-124 356.0
Chna7g00463 . 9 328 Peroxidase gene family AT5G64120 56.615 9.91e-123 353.0
Chna8g02234 . 4 335 Peroxidase gene family AT2G43480 54.819 8.39e-142 402.0
Chna00039044g00011 . 21 233 Peroxidase gene family AT4G37530 66.197 1.04e-96 292.0
Chna7g02029 . 28 320 Peroxidase gene family AT5G05340 62.925 2.90e-137 390.0
Chna6g01101 . 1 321 Peroxidase gene family AT3G01190 58.462 2.11e-138 393.0
Chna4g03478 . 2 316 Peroxidase gene family AT5G42180 69.497 5.17e-167 467.0
Chna6g01103 . 1 321 Peroxidase gene family AT3G01190 61.538 9.88e-148 417.0
Chna5g02256 . 25 324 Peroxidase gene family AT5G05340 75.748 9.09e-171 475.0
Chna6g04399 . 34 346 Peroxidase gene family AT1G71695 57.595 2.22e-135 388.0
Chna6g00617 . 8 323 Peroxidase gene family AT5G22410 51.097 4.06e-111 325.0
Chna8g00001 . 1 316 Peroxidase gene family AT5G42180 56.329 1.87e-128 366.0
Chna7g00464 . 9 328 Peroxidase gene family AT5G64120 54.829 1.14e-113 329.0
Chna6g03455 . 22 322 Peroxidase gene family AT4G17690 59.736 1.81e-132 379.0
Chna8g00595 . 1 316 Peroxidase gene family AT5G42180 56.646 6.67e-129 367.0
Chna6g04398 . 17 342 Peroxidase gene family AT1G71695 58.61 9.13e-141 402.0
Chna3g02544 . 7 321 Peroxidase gene family AT3G01190 57.188 7.90e-124 355.0
Chna4g03129 . 1 325 Peroxidase gene family AT1G05260 48.485 1.18e-98 292.0
Chna9g03530 . 108 203 Peroxidase gene family AT4G16270 50.0 7.25e-23 88.2
Chna8g01713 . 15 326 Peroxidase gene family AT1G05260 71.746 6.62e-167 465.0
Chna4g02256 . 1 316 Peroxidase gene family AT5G42180 65.506 7.35e-158 442.0
Chna1g00316 . 60 171 Peroxidase gene family AT5G05340 60.177 4.73e-37 125.0
Chna6g04273 . 17 340 Peroxidase gene family AT1G71695 62.963 1.14e-151 429.0
Chna6g04397 . 17 340 Peroxidase gene family AT1G71695 62.346 5.27e-150 425.0
Chna7g01052 . 9 328 Peroxidase gene family AT5G64120 56.923 7.86e-125 358.0
Chna2g01653 . 32 328 Peroxidase gene family AT5G64120 55.333 3.32e-116 337.0
Chna8g00425 . 47 345 Peroxidase gene family AT1G30870 54.181 2.69e-116 338.0
Chna9g00015 . 9 326 Peroxidase gene family AT4G11290 46.082 2.80e-91 275.0
Chna6g02078 . 2 336 Peroxidase gene family AT1G68850 61.493 1.60e-154 446.0
Chna4g01375 . 7 334 Peroxidase gene family AT5G66390 69.207 1.48e-174 485.0
Chna00003267g00006 . 3 315 Peroxidase gene family AT1G14540 57.006 3.21e-119 344.0
Chna00039180g00013 . 1 327 Peroxidase gene family AT5G66390 70.031 1.24e-171 483.0
Chna3g02426 . 34 92 Peroxidase gene family AT1G44970 52.542 1.03e-11 58.5
Chna6g01409 . 65 124 Peroxidase gene family AT5G64120 63.333 7.24e-24 90.5
Chna00001616g00058 . 1 329 Peroxidase gene family AT3G49960 68.389 5.77e-170 476.0
Chna6g04400 . 15 348 Peroxidase gene family AT1G71695 52.507 6.58e-122 353.0
Chna2g01392 . 9 326 Peroxidase gene family AT5G64120 56.966 6.02e-121 350.0
Chna7g03838 . 9 323 Peroxidase gene family AT2G18980 73.817 6.49e-173 480.0
Chna3g02545 . 7 321 Peroxidase gene family AT3G01190 56.875 1.74e-122 352.0
Chna5g01171 . 29 324 Peroxidase gene family AT5G05340 60.811 4.21e-120 346.0
Chna5g03302 . 107 336 Peroxidase gene family AT2G39040 54.348 1.71e-82 249.0
Chna9g02762 . 44 345 Peroxidase gene family AT1G30870 54.967 3.26e-116 338.0
Chna6g02117 . 2 336 Peroxidase gene family AT1G68850 61.493 1.13e-154 446.0
Chna6g01410 . 148 327 Peroxidase gene family AT2G41480 41.667 8.63e-42 141.0
Chna8g01712 . 15 326 Peroxidase gene family AT1G05260 63.492 6.03e-144 406.0
Chna4g03130 . 22 325 Peroxidase gene family AT1G05260 49.838 1.13e-92 286.0
Chna6g04274 . 39 346 Peroxidase gene family AT1G71695 59.091 1.34e-132 390.0
Chna7g02030 . 1 324 Peroxidase gene family AT5G05340 61.538 1.51e-143 406.0
Chna1g00310 . 30 324 Peroxidase gene family AT5G05340 55.743 1.57e-115 335.0
Chna9g02042 . 18 327 Peroxidase gene family AT5G19890 61.465 1.02e-139 397.0
Chna3g02504 . 1 275 Peroxidase gene family AT3G21770 42.652 9.13e-65 203.0
Chna8g00429 . 47 345 Peroxidase gene family AT1G30870 54.181 2.69e-116 338.0
Chna00001616g00057 . 8 329 Peroxidase gene family AT5G67400 65.528 1.09e-151 435.0
Chna1g00713 . 3 315 Peroxidase gene family AT1G14540 57.911 2.46e-121 349.0
Chna7g04070 . 24 341 Peroxidase gene family AT2G41480 61.442 1.28e-140 398.0
Chna7g02489 . 26 325 Peroxidase gene family AT1G05250 44.408 6.50e-88 264.0
Chna2g04740 . 1 330 Peroxidase gene family AT4G21960 76.133 0.0 526.0
Chna8g00016 . 87 343 Peroxidase gene family AT4G16270 30.882 2.36e-21 90.9
Chna7g02649 . 66 371 Peroxidase gene family AT4G25980 61.564 5.26e-138 394.0
Chna4g02757 . 134 230 Peroxidase gene family AT1G05250 63.918 1.84e-39 140.0
Chna1g00309 . 30 324 Peroxidase gene family AT5G05340 55.743 1.34e-115 335.0
Chna5g02254 . 25 324 Peroxidase gene family AT5G05340 76.744 1.63e-172 479.0
Chna6g01526 . 1 321 Peroxidase gene family AT3G01190 60.615 3.86e-146 412.0
Chna1g00311 . 30 324 Peroxidase gene family AT5G05340 55.743 7.13e-116 336.0
Chna5g01791 . 25 324 Peroxidase gene family AT5G05340 65.26 1.99e-145 410.0
Chna2g02475 . 5 321 Peroxidase gene family AT1G14550 56.522 6.17e-124 356.0
Chna2g01289 . 69 371 Peroxidase gene family AT4G25980 63.366 1.35e-146 421.0
Chna5g03300 . 156 350 Peroxidase gene family AT2G39040 50.769 5.51e-64 199.0
Chna5g01168 . 29 324 Peroxidase gene family AT5G05340 58.333 1.38e-127 367.0
Chna00039494g00038 . 230 297 Peroxidase gene family AT5G42180 54.412 7.80e-18 78.6
Chna6g03280 . 2 346 Peroxidase gene family AT1G44970 69.714 3.78e-176 491.0
Chna00039044g00010 . 1 329 Peroxidase gene family AT3G49960 68.389 5.41e-171 477.0
Chna7g04072 . 23 341 Peroxidase gene family AT2G41480 60.748 3.90e-141 400.0
Chna00038254g00016 . 9 346 Peroxidase gene family AT1G44970 69.886 1.23e-175 491.0
Chna00038949g00030 . 2 335 Peroxidase gene family AT2G43480 56.886 1.52e-144 410.0
Chna2g01652 . 7 322 Peroxidase gene family AT5G64120 55.452 5.47e-108 329.0
Chna1g00312 . 30 324 Peroxidase gene family AT5G05340 56.757 2.83e-116 337.0
Chna2g01379 . 1 327 Peroxidase gene family AT5G66390 70.031 1.80e-171 482.0
Chna6g01105 . 1 321 Peroxidase gene family AT3G01190 58.769 1.37e-139 396.0
Chna7g03834 . 25 325 Peroxidase gene family AT4G30170 73.841 2.53e-166 464.0
Chna8g01706 . 13 326 Peroxidase gene family AT1G05260 65.931 7.40e-159 445.0
Chna3g02923 . 10 335 Peroxidase gene family AT2G35380 62.195 1.60e-145 412.0
Chna7g04127 . 24 341 Peroxidase gene family AT2G41480 61.755 7.04e-141 399.0
Chna5g01167 . 76 324 Peroxidase gene family AT5G05340 63.454 2.10e-109 318.0
Chna2g00144 . 48 347 Peroxidase gene family AT1G49570 65.033 4.08e-139 403.0
Chna8g00129 . 81 325 Peroxidase gene family AT4G33420 73.705 4.71e-130 371.0
Chna6g04396 . 17 346 Peroxidase gene family AT1G71695 57.91 1.02e-141 404.0
Chna6g02967 . 108 311 Peroxidase gene family AT4G31760 29.302 1.72e-17 81.3
Chna5g05104 . 23 327 Peroxidase gene family AT2G37130 64.918 2.50e-158 444.0
Chna8g01079 . 3 336 Peroxidase gene family AT1G68850 61.976 5.05e-160 449.0
Chna9g02546 . 4 322 Peroxidase gene family AT2G22420 73.913 3.17e-178 495.0
Chna5g02257 . 25 324 Peroxidase gene family AT5G05340 75.083 2.53e-168 469.0
Chna6g04395 . 6 340 Peroxidase gene family AT1G71695 61.493 2.11e-152 431.0
Chna8g01708 . 13 326 Peroxidase gene family AT1G05260 66.246 5.04e-159 445.0
Chna4g03477 . 1 316 Peroxidase gene family AT5G42180 68.987 1.90e-166 464.0
Chna2g01575 . 65 394 Peroxidase gene family AT4G33870 48.649 2.52e-103 307.0
Chna9g00112 . 15 322 Peroxidase gene family AT5G51890 70.455 3.78e-162 453.0
Chna9g02028 . 18 327 Peroxidase gene family AT5G19890 60.51 1.03e-134 384.0
Chna1g00763 . 9 321 Peroxidase gene family AT1G14550 58.861 1.08e-122 352.0