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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00146 ATGGACAGATCTATGCTGACTGTGGGACCTGGTATGGATTTGCCAATTATGCATGATAGTGATAGGTATGAACTTGTTAGGGATATTGGGTCAGGTAACTTTGGTATTGCTAGGTTGATGAGAGATAAGCAAACCAATGAACTAGTTGCGGTTAAGTATATCGAGCGAGGCGATAAGATAGATGAGAATGTCCAAAGAGAAATTATTAATCACAGGTCATTAAGGCATCCAAATATCGTTAGATTCAAAGAGGTTATTTTAACGCCAACACATCTGGCGATTGTTATGGAATATGCATCTGGAGGGGAGTTATTTGAGCGGATATGTAATGCTGGACGGTTTCCAGAAGATGAGGCACGGTTCTTCTTTCAGCAACTCATTTCGGGCGTTAGTTACTGTCATAATATGCAAGTATGCCATCGAGACTTGAAACTGGAGAACACGCTACTAGATGGCAGCCCTGCTCCTCGGCTCAAAATTTGCGATTTTGGCTACTCCAAGATTGCAGACGTATGGTCTTGCGGTGTAACATTATATGTAATGCTTGTGGGAGCTTACCCTTTTGAGGATCCGGAAGAGCCTAAGAATTTTCGCAAGACCATACAGCGAATTCTGAATGTCCAGTACTCAATTCCATCCTATGTTCATATATCCCCCGAGTGCCGCCACTTGATCTCCAGAATATTTGTTGCAGATCCTGCTAAGCGGATAACCATGGACGAGATAAAAAACCACGAATGGTTTATAAAGAACCTACCAGCAGATCTCACAAAAGACGATGCAATGGACCAATTTGGTGGCCCCGATCAGCCGACTCAGACTGTCGATGAAATCATGCAGATAATCGCTGAAGCCACCATCCCTCCTGTTGGCGCCAATAATCTGAACCAGTATCTTACTGGTAGTCTGGATATGGATGATGACATGGATGAGGATCTTTTGAGTGATTGCGACCTTGATATTGATAGCAGTGGGGAGATTGTATACGCTATGTGA 996 43.37 MDRSMLTVGPGMDLPIMHDSDRYELVRDIGSGNFGIARLMRDKQTNELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFPEDEARFFFQQLISGVSYCHNMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIQRILNVQYSIPSYVHISPECRHLISRIFVADPAKRITMDEIKNHEWFIKNLPADLTKDDAMDQFGGPDQPTQTVDEIMQIIAEATIPPVGANNLNQYLTGSLDMDDDMDEDLLSDCDLDIDSSGEIVYAM 331
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00146 331 PANTHER SERINE-THREONINE KINASE 167 268 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Chna2g00146 331 SUPERFAMILY Protein kinase-like (PK-like) 15 258 IPR011009 -
Chna2g00146 331 Gene3D Transferase(Phosphotransferase) domain 1 168 256 - -
Chna2g00146 331 ProSitePatterns Serine-Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Chna2g00146 331 SMART serkin-6 23 248 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chna2g00146 331 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Chna2g00146 331 Gene3D Transferase(Phosphotransferase) domain 1 101 167 - -
Chna2g00146 331 ProSiteProfiles Protein kinase domain profile. 23 248 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chna2g00146 331 Pfam Protein kinase domain 23 167 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Chna2g00146 331 FunFam Serine-threonine-protein kinase SRK2E 13 98 - -
Chna2g00146 331 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00146 K14498 serine/threonine-protein kinase SRK2 [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:9103303 Chna4g01941 Chna-Chr4:123025188 dispersed
Chna Chna-Chr2:9103303 Chna5g01264 Chna-Chr5:61894779 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna3g00156 . 326 444 CBL-interacting serine-threonine protein kinases family AT3G17510 55.462 3.23e-38 132.0
Chna5g04334 . 8 468 CBL-interacting serine-threonine protein kinases family AT5G25110 57.971 0.0 566.0
Chna2g00146 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 36.184 2.15e-54 182.0
Chna1g01437 . 2 425 CBL-interacting serine-threonine protein kinases family AT5G45820 65.57 0.0 610.0
Chna3g03749 . 35 111 CBL-interacting serine-threonine protein kinases family AT2G25090 33.333 1.18e-07 47.8
Chna8g00747 . 42 300 CBL-interacting serine-threonine protein kinases family AT5G25110 44.485 1.52e-66 216.0
Chna7g00717 . 16 438 CBL-interacting serine-threonine protein kinases family AT4G30960 75.059 0.0 628.0
Chna6g02295 . 5 226 CBL-interacting serine-threonine protein kinases family AT2G26980 41.071 4.03e-55 178.0
Chna00001175g00181 . 1 454 CBL-interacting serine-threonine protein kinases family AT5G58380 66.231 0.0 628.0
Chna2g04239 . 28 457 CBL-interacting serine-threonine protein kinases family AT1G30270 84.651 0.0 769.0
Chna2g04661 . 1 422 CBL-interacting serine-threonine protein kinases family AT2G30360 58.222 5.19e-177 501.0
Chna2g03166 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.091 2.99e-51 182.0
Chna2g02948 . 29 284 CBL-interacting serine-threonine protein kinases family AT2G25090 28.405 6.94e-25 109.0
Chna6g02862 . 253 318 CBL-interacting serine-threonine protein kinases family AT5G25110 38.235 4.31e-08 48.9
Chna8g02239 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 32.143 5.15e-48 163.0
Chna3g03345 . 1 444 CBL-interacting serine-threonine protein kinases family AT5G10930 63.393 0.0 579.0
Chna3g02798 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 37.722 1.49e-56 187.0
Chna5g04335 . 38 465 CBL-interacting serine-threonine protein kinases family AT5G25110 63.677 0.0 582.0
Chna3g00462 . 184 229 CBL-interacting serine-threonine protein kinases family AT5G10930 50.0 3.54e-09 53.9
Chna00039737g00003 . 58 340 CBL-interacting serine-threonine protein kinases family AT2G26980 32.302 5.00e-38 137.0
Chna4g02858 . 6 450 CBL-interacting serine-threonine protein kinases family AT5G58380 59.688 0.0 548.0
Chna5g01264 . 11 275 CBL-interacting serine-threonine protein kinases family AT5G10930 37.545 8.55e-48 164.0
Chna7g02586 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 43.015 4.55e-68 217.0
Chna4g00575 . 31 469 CBL-interacting serine-threonine protein kinases family AT5G25110 69.615 0.0 644.0
Chna4g00528 . 314 444 CBL-interacting serine-threonine protein kinases family AT3G17510 58.015 1.13e-45 152.0
Chna3g00652 . 11 116 CBL-interacting serine-threonine protein kinases family AT5G35410 46.729 1.97e-25 97.4
Chna1g01006 . 2 447 CBL-interacting serine-threonine protein kinases family AT1G01140 73.094 0.0 696.0
Chna7g03674 . 32 165 CBL-interacting serine-threonine protein kinases family AT4G14580 38.686 1.37e-25 106.0
Chna3g03060 . 102 258 CBL-interacting serine-threonine protein kinases family AT5G57630 26.455 2.98e-07 51.2
Chna4g01941 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.739 6.10e-67 216.0
Chna7g02018 . 13 432 CBL-interacting serine-threonine protein kinases family AT2G30360 60.9 0.0 526.0
Chna7g02023 . 1 452 CBL-interacting serine-threonine protein kinases family AT5G58380 62.472 0.0 587.0
Chna00004508g00002 . 297 338 CBL-interacting serine-threonine protein kinases family AT2G26980 64.286 5.33e-12 57.8
Chna2g01339 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 37.407 8.51e-49 167.0
Chna8g02620 . 30 326 CBL-interacting serine-threonine protein kinases family AT1G30270 40.432 4.76e-70 224.0
Chna00038359g00006 . 13 272 CBL-interacting serine-threonine protein kinases family AT2G26980 43.015 4.55e-68 217.0
Chna00006111g00028 . 32 90 CBL-interacting serine-threonine protein kinases family AT5G35410 35.593 9.40e-07 45.8
Chna7g00259 . 12 282 CBL-interacting serine-threonine protein kinases family AT3G17510 70.182 5.76e-142 406.0
Chna6g04447 . 13 289 CBL-interacting serine-threonine protein kinases family AT2G25090 35.294 1.40e-47 164.0
Chna3g02777 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 37.722 1.49e-56 187.0
Chna2g00433 ACH 10 224 CBL-interacting serine-threonine protein kinases family AT5G58380 28.511 3.52e-13 69.3
Chna00039108g00001 . 18 441 CBL-interacting serine-threonine protein kinases family AT4G30960 73.721 0.0 619.0
Chna3g00829 ACH 18 273 CBL-interacting serine-threonine protein kinases family AT5G10930 30.268 4.99e-33 126.0
Chna3g01974 . 15 472 CBL-interacting serine-threonine protein kinases family AT4G18700 75.705 0.0 719.0
Chna1g00218 . 165 288 CBL-interacting serine-threonine protein kinases family AT4G24400 37.594 6.57e-22 89.7
Chna1g01436 . 15 462 CBL-interacting serine-threonine protein kinases family AT4G18700 76.169 0.0 701.0
Chna6g00417 ACH 5 278 CBL-interacting serine-threonine protein kinases family AT2G30360 30.249 3.17e-45 160.0
Chna2g03165 . 19 285 CBL-interacting serine-threonine protein kinases family AT2G30360 37.091 8.08e-53 179.0
Chna8g02694 . 65 168 CBL-interacting serine-threonine protein kinases family AT5G35410 30.769 2.64e-07 49.7
Chna1g01714 . 1 430 CBL-interacting serine-threonine protein kinases family AT4G24400 75.406 0.0 675.0
Chna2g02833 . 201 278 CBL-interacting serine-threonine protein kinases family AT5G58380 58.974 1.16e-24 98.2
Chna9g03047 . 6 373 CBL-interacting serine-threonine protein kinases family AT2G26980 80.978 0.0 640.0
Chna7g00848 . 83 132 CBL-interacting serine-threonine protein kinases family AT5G45810 82.0 6.62e-24 92.0
Chna5g03270 . 3 279 CBL-interacting serine-threonine protein kinases family AT5G10930 35.714 9.93e-56 184.0
Chna5g04258 . 38 468 CBL-interacting serine-threonine protein kinases family AT5G25110 61.4 0.0 561.0
Chna3g01705 . 5 289 CBL-interacting serine-threonine protein kinases family AT4G24400 41.077 6.49e-66 215.0
Chna3g02178 . 5 176 CBL-interacting serine-threonine protein kinases family AT2G26980 25.14 1.96e-06 47.8
Chna7g00512 . 1 446 CBL-interacting serine-threonine protein kinases family AT5G35410 60.532 0.0 550.0
Chna9g01658 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.362 3.83e-92 284.0
Chna4g00584 . 18 122 CBL-interacting serine-threonine protein kinases family AT4G14580 33.333 9.82e-16 70.9
Chna00039854g00041 . 2 297 CBL-interacting serine-threonine protein kinases family AT4G24400 39.739 6.10e-67 216.0
Chna7g03907 . 7 439 CBL-interacting serine-threonine protein kinases family AT4G30960 69.655 0.0 590.0
Chna00011317g00001 . 12 284 CBL-interacting serine-threonine protein kinases family AT2G25090 28.102 1.31e-28 119.0
Chna6g02864 . 8 267 CBL-interacting serine-threonine protein kinases family AT4G24400 35.955 4.92e-41 145.0
Chna9g03615 . 14 206 CBL-interacting serine-threonine protein kinases family AT2G26980 43.721 4.28e-53 179.0
Chna5g04259 . 38 465 CBL-interacting serine-threonine protein kinases family AT5G25110 64.108 0.0 592.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chna Pkinase 3e-42 CL0016 PK CAMK_OST1L