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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00192 ATGTCAAGAAAAAACTATCATATAAAGTCCACACTTGTTCAATTCTCATCTTTGCATCTCTTACCAAACATGGCTTCTTCTACCAACTGTTGCAACATCATCTTCCATGTTCTATTGCTTTTACAGTTATGCAGTTCCCGGGTTATCTACGAAAAATCCAAAAACGATCACAACGAAGAAAATCATATAGAAATATTTGGAAAGAACGAACATGGTGATTTGGATCCTGCTCTAAAGGTGTTCTTCCATGTAAAGGACTTATACTCGGGAAAAAACATGTCAATTTATTTTGCGGTTAATGACCCATCAACAACTCCTCGACTACTAGCAAGAGAACAAGCCGATTTGATACCATTCTCCTCATCAAAACTCCCATACCTTCTTGACTTTATCTCCTTAGCCGAGGGTTCGCCACAAGCCATAGCTATGGAGCAAACACTTAAACAATGTGAGCTTGAGCCGGTACCTGGTGAGATCAGGTTTTGCACTAGCTCCTTAGAGTCCATGCTGGACTCAACGCGTGGCATATTAGGTACTGACAAACTGAAGACTTTGACAACCCAAATCCATAATTTGACAAAGCCCAGTTTCACCCTTTTGCAAGGGTATACCTTTTTGAAAGAGCCATTGGAGATTCATGTTCCTGATATGGTGGCTTGTCATACCATGGCTTATCCTTATGCAGTTTACTATTGTCATGGTCAAAAGGGAAATAATAGGGTTTTCCGGATTCCTTTAGGGGGTGAGAACGGAAATAGAGTCGATGCTATTGCTGTATGCCATATGGACACATCTATGTGGGATCATGATCACGTGGCTTTTCGTGTACTTGGAGGACACCCTGGCAGTTCCCCGGTGTGCCATTTCCTCCCTGCTGATAACATCGTGTGGATACCATCACCGTAG 906 42.16 MSRKNYHIKSTLVQFSSLHLLPNMASSTNCCNIIFHVLLLLQLCSSRVIYEKSKNDHNEENHIEIFGKNEHGDLDPALKVFFHVKDLYSGKNMSIYFAVNDPSTTPRLLAREQADLIPFSSSKLPYLLDFISLAEGSPQAIAMEQTLKQCELEPVPGEIRFCTSSLESMLDSTRGILGTDKLKTLTTQIHNLTKPSFTLLQGYTFLKEPLEIHVPDMVACHTMAYPYAVYYCHGQKGNNRVFRIPLGGENGNRVDAIAVCHMDTSMWDHDHVAFRVLGGHPGSSPVCHFLPADNIVWIPSP 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00192 301 SMART BURP-2 79 300 IPR004873 -
Chna2g00192 301 ProSiteProfiles BURP domain profile. 81 300 IPR004873 -
Chna2g00192 301 Pfam BURP domain 80 298 IPR004873 -
Chna2g00192 301 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 59 300 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00192 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58517 Chna2g00192 Chna5g01238
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:11617375 Chna5g01239 Chna-Chr5:60186216 dispersed
Chna Chna-Chr2:11499952 Chna2g00192 Chna-Chr2:11617375 proximal