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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00232 ATGATACGAGGAGTAATAATAATAAATGATCAAGGCAAGCCACGCCTCATCAAATTCTACGACTATCAGCCTATTGAGAAACAACACGAAATCATTCGCAACATTTACACAGTTCTATGCAATAGAGCGGAGAATGTGAGCAACTTTGTTCAAGCTGATTCCACTTTTGGACCGGATACACGACTTGTATACAAGACTTTTGCTACACTGTACTTCATTGTCATATTTGATGAGTCTGAAAACGAGCTTGCCATTCTAGATCTTATGCAAGTATTCGTGGAGACGTTGGACAAGTGTTTTAGTAATGTTTGTGAGCTCGATATTGTGTTCAATTTCAGCAAGGTACATACCATCCTCAATGAGATCATCTTGGGAGGTCAAGTTGTAGAAATGAGTTCTGCCGAAGTTGTCAAGGCAGTGGACGAGATATCATGGCAAGAGAAGAACAAATTCTCTCATTCGAGCTCCAACGCCACATCTAGCTGGCAGAGACGATAA 498 40.76 MIRGVIIINDQGKPRLIKFYDYQPIEKQHEIIRNIYTVLCNRAENVSNFVQADSTFGPDTRLVYKTFATLYFIVIFDESENELAILDLMQVFVETLDKCFSNVCELDIVFNFSKVHTILNEIILGGQVVEMSSAEVVKAVDEISWQEKNKFSHSSSNATSSWQRR 165
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00232 165 ProSitePatterns Clathrin adaptor complexes small chain signature. 62 72 IPR000804 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Chna2g00232 165 Pfam Clathrin adaptor complex small chain 1 143 IPR022775 -
Chna2g00232 165 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 2 144 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Chna2g00232 165 SUPERFAMILY SNARE-like 1 142 IPR011012 -
Chna2g00232 165 Gene3D - 1 159 - -
Chna2g00232 165 FunFam AP complex subunit sigma 1 157 - -
Chna2g00232 165 PIRSF AP-complex-sigma 1 157 IPR016635 GO:0015031(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00232 K12399 AP-3 complex subunit sigma
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:14110485 Chna2g04252 Chna-Chr2:409053572 dispersed