Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chna2g00258	ATGGCCAAAAATTCGGTTGCTTACCTAGGCTTCCTTCTGCTTCTCATTGTTGCTATCTCAGAAATCGCGACAGTGAAGGGAGAATTATGCGAGAAAGCGAGCAAGACATGGACTGGAAATTGTGGAAATACAAGACACTGTGACGATCAATGCAAGTCGTGGGAGGGTGCAGCCCATGGAGCTTGCCACGTACGTGGGGGGAAACATATGTGTTTTTGCTACTTCAATTGTCCCAAAGCCGCGAAACTGGCTCAAGATAAACTGAAAGCCGAAGAGCTCGCTAAGGATAAGATTGAAGCCAAGAATTAA	309	46.28	MAKNSVAYLGFLLLLIVAISEIATVKGELCEKASKTWTGNCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCPKAAKLAQDKLKAEELAKDKIEAKN	102

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chna2g00258	102	Coils	Coil	81	101	-	-
	Chna2g00258	102	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	77	-	GO:0006952(PANTHER)
	Chna2g00258	102	Gene3D	-	29	77	IPR036574	-
	Chna2g00258	102	SUPERFAMILY	Scorpion toxin-like	28	77	IPR036574	-
	Chna2g00258	102	Pfam	Gamma-thionin family	29	77	-	-
	Chna2g00258	102	SMART	gth-4	29	77	IPR003614	GO:0006952(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chna2g00258	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chna	Chna-Chr2:15071878	Chna7g04586	Chna-Chr7:370072434	dispersed
	Chna	Chna-Chr2:14961727	Chna2g00258	Chna-Chr2:15071878	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Chna4g03385	.	12	76	Plant Defensins gene family	AT1G61070	37.879	2.51e-11	52.8
	Chna7g04517	.	1	78	Plant Defensins gene family	AT1G19610	51.282	9.61e-26	90.5
	Chna8g02820	.	8	77	Plant Defensins gene family	AT2G02130	46.835	4.44e-21	77.4
	Chna2g00248	.	1	78	Plant Defensins gene family	AT1G19610	43.59	4.30e-19	74.7
	Chna2g00256	.	1	78	Plant Defensins gene family	AT1G19610	52.564	9.24e-27	92.8
	Chna4g03384	.	10	76	Plant Defensins gene family	AT1G61070	32.353	4.08e-10	48.9
	Chna2g00253	.	13	78	Plant Defensins gene family	AT1G19610	46.97	1.79e-16	67.4
	Chna4g03386	.	12	76	Plant Defensins gene family	AT1G61070	37.879	2.30e-11	53.1
	Chna2g00249	.	1	78	Plant Defensins gene family	AT1G19610	42.308	1.40e-18	73.6
	Chna2g00258	.	13	78	Plant Defensins gene family	AT1G19610	57.576	8.35e-26	90.1
	Chna4g01556	.	13	78	Plant Defensins gene family	AT1G19610	53.03	4.95e-23	83.2
	Chna4g03382	.	7	76	Plant Defensins gene family	AT1G61070	39.437	3.85e-13	56.6
	Chna2g00251	.	3	78	Plant Defensins gene family	AT1G19610	43.421	1.96e-15	64.7
	Chna4g03941	.	10	76	Plant Defensins gene family	AT1G61070	39.706	7.79e-13	55.8
	Chna7g04586	.	1	78	Plant Defensins gene family	AT1G19610	51.282	3.56e-26	91.7
	Chna2g00257	.	13	78	Plant Defensins gene family	AT1G19610	57.576	1.53e-25	89.7
	Chna2g00250	.	3	78	Plant Defensins gene family	AT1G19610	28.947	1.65e-07	43.9
	Chna2g00247	.	7	77	Plant Defensins gene family	AT1G19610	47.887	8.41e-19	75.5
	Chna6g02203	.	1	77	Plant Defensins gene family	AT2G02120	60.256	8.57e-31	101.0