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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00412 ATGGCAATAAACAGGGTTGGATCATCAGGAGGAGCATCATGTAATCCAGCAATAGTAAAGATGTTAATAACATTTATAGGAATAAGTATGGTTGGTTATTTAATAGGTCCACCTTTATATTGGCATCTTCTTGAAGCCCTTCATCGCTCTTCTGTTGCTGCTGTTTCCTGCCCTGTTTGCAACTGTGATTGTGATTCTCAACCTCTTCTTTCCATTCCTCAAGCGCTAAGCAACGGTTCCTTCACAGTGAGTGGAGACACAGAAAAGAATTTTGTCGAGCTTCTCTCTGAAGAATTAAAGCTACGTGAAGCTGAAGCTTTAGAAAGTCAACAACGTGCTGACATGGCACTTCTCGAGGCCAAGAAGTTAACATCCCAATATCAAAAAGAAGCAGACAAGTGTAATTCAGGAATGGAAACTTGTGAAGAAGCTCGTGAAAAAGCCGAAGCAGCTTTACTAGCACAAAAACAACAAAGTGAAATGTGGGAATTAAGAGCCAAACAAAGAGGTTGGAAAGAAGGCAGTACTAAGTCTGTAAACACTGCTTGA 549 40.62 MAINRVGSSGGASCNPAIVKMLITFIGISMVGYLIGPPLYWHLLEALHRSSVAAVSCPVCNCDCDSQPLLSIPQALSNGSFTVSGDTEKNFVELLSEELKLREAEALESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAEAALLAQKQQSEMWELRAKQRGWKEGSTKSVNTA 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00412 182 Coils Coil 101 121 - -
Chna2g00412 182 Pfam Protein of unknown function (DUF1068) 17 174 IPR010471 -
Chna2g00412 182 PANTHER EXPRESSED PROTEIN 13 179 - -
Chna2g00412 182 Coils Coil 138 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00412 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:25980243 Chna7g03922 Chna-Chr7:326961388 dispersed
Chna Chna-Chr2:25980243 Chna5g01101 Chna-Chr5:53182023 wgd