AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00417 ATGGAGGAGGTGATGACGTTAGCAGATGCAGCATACCATGCTAACAAGGTGATCACAGCTGTGACACCATCATCGTCCTCAAGAGGTCCATTGGTGCTGTTGTATAGTGTTCCTTTGCTATCAGCGTTACTTGCCTTTGCTATTGCTCAGTTTCTTAAAGTCATTACTACTTGGTATAAGGAAAAGAGATGGGATCCTAAAAAGATTGTCGGCTCTGGTGGAATGCCATCATCTCATTCTTCAACTGTTGTGGCACTTGCAGTATCTATTGGTCTACATGATGGAATTGATTCTTCATCGTTTGCAATTGCTGTTGTCATGGCTTTTATTGTTATGTATGATGCAACTGGAGTCAGACTCCATGCTGGTCGCCAAGCTGAAGTGTTGAACCAGATAGTGTGTGAATTTCCTCCGGAACACCCTTTATCCACATCCATACCTCTACGTGATTCGCTTGGGCATACTCCATTACAGGTGGTTGCAGGGGCCATACTAGGATGCATAGTGGCATTCGCGATGAAAGCAACTGACTAG 534 44.57 MEEVMTLADAAYHANKVITAVTPSSSSRGPLVLLYSVPLLSALLAFAIAQFLKVITTWYKEKRWDPKKIVGSGGMPSSHSSTVVALAVSIGLHDGIDSSSFAIAVVMAFIVMYDATGVRLHAGRQAEVLNQIVCEFPPEHPLSTSIPLRDSLGHTPLQVVAGAILGCIVAFAMKATD 177
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00417 177 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 18 175 IPR003832 -
Chna2g00417 177 Pfam Divergent PAP2 family 38 169 IPR003832 -
Chna2g00417 177 CDD PAP2-like 39 172 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00417 K09775 uncharacterized protein
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
58544 Chna2g00417 Chna5g01126
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:26416983 Chna8g02121 Chna-Chr8:166386747 dispersed
Chna Chna-Chr2:26416983 Chna6g03864 Chna-Chr6:330307698 transposed
Chna Chna-Chr2:26416983 Chna6g03893 Chna-Chr6:332005652 transposed