AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00419 ATGGAAGCTCAACTTAAGGCAGATCAGCAGATGGAAGAGAACATCTTTTCCGGAAGAGGAATTTCTTTTACTCGTGTTTTAGAGGCTGTACCGTTTGAGGGTTCCGGAGACAAGATCAAACTACCAAATTCATGTTTCAACGATTTATCCGGCGAAGGTGCTTTTGAAAAAGGTCCGCTTCATTTCCAGTTGTCAGTAGCTGACCAAGATAAGTCTTCAAAGTCAGACCACGGGTCAACCCATGCCGGAGTCTTGGAATTTAGTGCTGAAGAAGGTACTGTCGGGATCCCGCCTCACATTTGGAATAATTTATACTCTAAACAAGATCCAATGACTCCATTAATTGAAGTGAAGTACGTCTGGTTAGCAAAGGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCAAACCACAAAGCCGTTCTTGAAACAACCCTTCGCCAGCATGCGACTTTATCTGAAAATGAAGTTTTAACTGTCAAACATGGTGTGTTGACTTACCATCTACGTGTACTTGAGTTGAAACCCTCACCAAGTGTATCTGTTCTTGAAACAGATATTGAAGTCGATATTATGGGTCCTGATACACTTCCTGAAAAACCCAACAACCAACACGTCCTGAAACCACTAACGTTCGGGAAATCAGAATCTGGTGTTATAAATGAAGGGGAATACGTTTATTACAAATTTTCAGTAGATGATGACACATGGGGTATAATTAGTCGAGGAGATGCTGAAATTGAAGTGAAGTTAGATTCAGAAGCTAAAGATGGAGATACTGATCTTTATCTTTCACAACACCCGTTATTATTCCCAAACACACACCAACATGGTTGGTCTAGCCATGACATGGGTTCAAAATGCTTAGTTCTTGGGTCAAAGGACCAGAACCTGGGTGCTGGAACTTACAGTGTCGGTGTATATGGCTTCAAAGGAACCACAAAATACAATATTATAGTATCCGTTCAAGATACTTCCAACTCAAAGGTAGGTCAACAACCTGTATCTGCAGCTTCTTCTTCATCAACAGCGGATACTGTAGAATGCAGCAATTGCAAACATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGCAGGAGACATAATGTCATTTGTCAACATGAGGGATGTGGTATAGTGTTGAGGACTGAAGAGGTGCAACACCAGTCTTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGAGACATGGTTCAAGCTGGTTCTTTAGCTGCTGATACACGGGATCGGTTAAGAGGACTCTCAGAACATGAGAGTCTTTGTGGGTCCAGAACTGCCCCATGCGACTCTTGTGGTCGGTCTGTCATGTTGAAAGAAATGGACATTCATCAAGTAGCTGTTCATCAGAAGAGTTGA 1407 42.15 MEAQLKADQQMEENIFSGRGISFTRVLEAVPFEGSGDKIKLPNSCFNDLSGEGAFEKGPLHFQLSVADQDKSSKSDHGSTHAGVLEFSAEEGTVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSENEVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIMGPDTLPEKPNNQHVLKPLTFGKSESGVINEGEYVYYKFSVDDDTWGIISRGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDQNLGAGTYSVGVYGFKGTTKYNIIVSVQDTSNSKVGQQPVSAASSSSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHEGCGIVLRTEEVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRTAPCDSCGRSVMLKEMDIHQVAVHQKS 468
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00419 468 Gene3D - 124 197 - -
Chna2g00419 468 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 28 407 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Chna2g00419 468 SUPERFAMILY TRAF domain-like 352 412 - -
Chna2g00419 468 Gene3D - 19 122 IPR042299 -
Chna2g00419 468 Pfam TRAFD1-XAF1, zinc finger 431 460 IPR049439 -
Chna2g00419 468 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 343 401 IPR013083 -
Chna2g00419 468 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 402 466 IPR013083 -
Chna2g00419 468 Gene3D - 219 333 - -
Chna2g00419 468 ProSiteProfiles Zinc finger TRAF-type profile. 369 411 IPR001293 GO:0008270(InterPro)
Chna2g00419 468 Pfam Ubiquitin fusion degradation protein UFD1 35 199 IPR004854 GO:0006511(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00419 K14016 ubiquitin fusion degradation protein 1