Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g00419 | ATGGAAGCTCAACTTAAGGCAGATCAGCAGATGGAAGAGAACATCTTTTCCGGAAGAGGAATTTCTTTTACTCGTGTTTTAGAGGCTGTACCGTTTGAGGGTTCCGGAGACAAGATCAAACTACCAAATTCATGTTTCAACGATTTATCCGGCGAAGGTGCTTTTGAAAAAGGTCCGCTTCATTTCCAGTTGTCAGTAGCTGACCAAGATAAGTCTTCAAAGTCAGACCACGGGTCAACCCATGCCGGAGTCTTGGAATTTAGTGCTGAAGAAGGTACTGTCGGGATCCCGCCTCACATTTGGAATAATTTATACTCTAAACAAGATCCAATGACTCCATTAATTGAAGTGAAGTACGTCTGGTTAGCAAAGGGAACATATGCAAAGCTTCAATCAGAAGAACTCGGGTTCTCAGATATACCAAACCACAAAGCCGTTCTTGAAACAACCCTTCGCCAGCATGCGACTTTATCTGAAAATGAAGTTTTAACTGTCAAACATGGTGTGTTGACTTACCATCTACGTGTACTTGAGTTGAAACCCTCACCAAGTGTATCTGTTCTTGAAACAGATATTGAAGTCGATATTATGGGTCCTGATACACTTCCTGAAAAACCCAACAACCAACACGTCCTGAAACCACTAACGTTCGGGAAATCAGAATCTGGTGTTATAAATGAAGGGGAATACGTTTATTACAAATTTTCAGTAGATGATGACACATGGGGTATAATTAGTCGAGGAGATGCTGAAATTGAAGTGAAGTTAGATTCAGAAGCTAAAGATGGAGATACTGATCTTTATCTTTCACAACACCCGTTATTATTCCCAAACACACACCAACATGGTTGGTCTAGCCATGACATGGGTTCAAAATGCTTAGTTCTTGGGTCAAAGGACCAGAACCTGGGTGCTGGAACTTACAGTGTCGGTGTATATGGCTTCAAAGGAACCACAAAATACAATATTATAGTATCCGTTCAAGATACTTCCAACTCAAAGGTAGGTCAACAACCTGTATCTGCAGCTTCTTCTTCATCAACAGCGGATACTGTAGAATGCAGCAATTGCAAACATTATATACCCTTGAGAACCATAGCACTTCATGAGGCGTATTGCAGGAGACATAATGTCATTTGTCAACATGAGGGATGTGGTATAGTGTTGAGGACTGAAGAGGTGCAACACCAGTCTTCAGAGTGTGCCTTACGTCTTGTGACATGTCGATTTTGTGGAGACATGGTTCAAGCTGGTTCTTTAGCTGCTGATACACGGGATCGGTTAAGAGGACTCTCAGAACATGAGAGTCTTTGTGGGTCCAGAACTGCCCCATGCGACTCTTGTGGTCGGTCTGTCATGTTGAAAGAAATGGACATTCATCAAGTAGCTGTTCATCAGAAGAGTTGA | 1407 | 42.15 | MEAQLKADQQMEENIFSGRGISFTRVLEAVPFEGSGDKIKLPNSCFNDLSGEGAFEKGPLHFQLSVADQDKSSKSDHGSTHAGVLEFSAEEGTVGIPPHIWNNLYSKQDPMTPLIEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSENEVLTVKHGVLTYHLRVLELKPSPSVSVLETDIEVDIMGPDTLPEKPNNQHVLKPLTFGKSESGVINEGEYVYYKFSVDDDTWGIISRGDAEIEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDQNLGAGTYSVGVYGFKGTTKYNIIVSVQDTSNSKVGQQPVSAASSSSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHEGCGIVLRTEEVQHQSSECALRLVTCRFCGDMVQAGSLAADTRDRLRGLSEHESLCGSRTAPCDSCGRSVMLKEMDIHQVAVHQKS | 468 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g00419 | 468 | Gene3D | - | 124 | 197 | - | - | |
| Chna2g00419 | 468 | PANTHER | UBIQUITIN FUSION DEGRADATON PROTEIN 1 | 28 | 407 | IPR004854 | GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER) | |
| Chna2g00419 | 468 | SUPERFAMILY | TRAF domain-like | 352 | 412 | - | - | |
| Chna2g00419 | 468 | Gene3D | - | 19 | 122 | IPR042299 | - | |
| Chna2g00419 | 468 | Pfam | TRAFD1-XAF1, zinc finger | 431 | 460 | IPR049439 | - | |
| Chna2g00419 | 468 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 343 | 401 | IPR013083 | - | |
| Chna2g00419 | 468 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 402 | 466 | IPR013083 | - | |
| Chna2g00419 | 468 | Gene3D | - | 219 | 333 | - | - | |
| Chna2g00419 | 468 | ProSiteProfiles | Zinc finger TRAF-type profile. | 369 | 411 | IPR001293 | GO:0008270(InterPro) | |
| Chna2g00419 | 468 | Pfam | Ubiquitin fusion degradation protein UFD1 | 35 | 199 | IPR004854 | GO:0006511(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g00419 | K14016 | ubiquitin fusion degradation protein 1 |