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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00420 ATGAACGAGTCGGACTCATCATCGTTTCCTCGTCTCAATGAGGTGGAGAAGATCATTGGATACGAATTCAAGAACAAAGAGTTATTAAAAGAAGCGTTTACTCATAATTCTTACAAAGATGACAATTGTCCATCGTACGAGCGGCTTGAATACCTTGGAGACTCGTTTTTGAACCATATAATTGCCAGAGAACACTTTTTTCTATATCCAAGGATGAAGTCTGGTGAGTTGACTCTGCTTCGTGCCGCCAATGTTGATACTGAAGCATTGGCTCGTGTTGCATTCAAACATGGCTTACATAGGTTTCTTAGGCACCAAGATCCTCTACTCGAGGGACGGGTACAAGAACTTATGGAAGGAATCAAACAGTATCCATTGCACTCCCATGGTTTAATCAATTCACCTAAGATACTTGCAGACATTGTGGAGTCTTTAATTGGTGCAGTCTATGTGGACACCAATTTATCGATCGATGCTACATGGGAGGTGGTGAAGAGCCTGTTACAACCTTTGACAACCCCAGAAAACCTCAAGCTAAACCCCGTGACAAAGTTGAATGAAACGTGCCAAAAGATCGGGATCAAATTGGAATACAAAAATTTATGGGTCGAGTCGGGGGAGATTGAGATATATAATGGTAACGAGTTAATCGGGAAAGGAAACTACAAGAAAAAGAAAACGACAGCGAAGAACAAAGCAGCAGCCGATGCATATGTAAATCTTGTCAAACAATTGGGTCTCAAAGATGATACAGAATTTGATGAAATATTACTTTAA 777 40.54 MNESDSSSFPRLNEVEKIIGYEFKNKELLKEAFTHNSYKDDNCPSYERLEYLGDSFLNHIIAREHFFLYPRMKSGELTLLRAANVDTEALARVAFKHGLHRFLRHQDPLLEGRVQELMEGIKQYPLHSHGLINSPKILADIVESLIGAVYVDTNLSIDATWEVVKSLLQPLTTPENLKLNPVTKLNETCQKIGIKLEYKNLWVESGEIEIYNGNELIGKGNYKKKKTTAKNKAAADAYVNLVKQLGLKDDTEFDEILL 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00420 258 FunFam Endoribonuclease dicer-like 1 6 175 - -
Chna2g00420 258 ProSitePatterns Ribonuclease III family signature. 47 55 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 Pfam Double-stranded RNA binding motif 181 238 IPR014720 -
Chna2g00420 258 SMART riboneu5 27 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 SUPERFAMILY dsRNA-binding domain-like 136 241 - -
Chna2g00420 258 Gene3D Ribonuclease III domain 9 175 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 CDD RIBOc 27 177 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 ProSiteProfiles Ribonuclease III family domain profile. 12 154 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 Pfam Ribonuclease III domain 47 153 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00420 258 Gene3D - 176 244 - -
Chna2g00420 258 PANTHER DICER-RELATED 12 247 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Chna2g00420 258 SUPERFAMILY RNase III domain-like 12 173 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00420 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:26469186 Chna7g03065 Chna-Chr7:269671633 dispersed
Chna Chna-Chr2:26469186 Chna2g00421 Chna-Chr2:26473679 tandem