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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00421 ATGATTTCTTACTCTCATTATTCAATCGAATCTAGTTCAATGGCTTCATCATCATCATCATGGTGGCAATCATTGTTTTCTCCATCCAAAACACTTCACTGCTTCAAAGAATACGCTGTTAAAACCAAAGGTATGGTATTGAAATCATCACAAGATGACAAAGCATTAGCAAGTCTTAAGGAGATGGAGAACATTATAGGGTACAAATTCAAGAAAAAGTTTTTATTACAACAAGCTTTTACGCATTCAAGCTATCAAGGTGCTGAATCCTATGAAAGACTGGAATATGTTGGTGATTCTATTCTCAATTTTCTAATCAGTAAACAGCAATTCTATAAGTACCCGAATCTCCCACCAGGGTCATTGACTGCTCTTCGAGCTGCCAACGTTGATACTGAGAAGCTAGCACGCGTAGCAGTTAAATATAACTTTCATAAGTACATTCGACATGAAAACCCGACGCTTAGTAAACAAATTCGGGTGTTTACGAGAGCTCTTGAAAAGTACCCATTTCATTCATATGGATTAATAGATGCTCCAAAGACATTAGCTGATATTGTTGAATCCACAATAGGGGCCATCTATGTTGACAGCAACTCTTCGATTGATACCACATGGGAGGTGGCTAAGATTCTACTCGAGCCCATGATCACTCCTGAAATGCTGCAACAGAATCCGGTCAGGAAGCTCAATGAACTCTGCCACAAAAAGAAACTGAAGATACGATTCAGAGATAAATGGTCAAAACAAGGGGTTTATGAAGTTTTAACCGGTGATCAACTTATAGGAAGAGGTGAATACAAAGCCAAGAAGGAAATTGCAGTGAACAGAGCGGCTGAGGATGCATGCAACAACATTTTGAATACCATGGATGATAAAAACATCATAACTGAAACTGAAGAATAG 906 38.41 MISYSHYSIESSSMASSSSSWWQSLFSPSKTLHCFKEYAVKTKGMVLKSSQDDKALASLKEMENIIGYKFKKKFLLQQAFTHSSYQGAESYERLEYVGDSILNFLISKQQFYKYPNLPPGSLTALRAANVDTEKLARVAVKYNFHKYIRHENPTLSKQIRVFTRALEKYPFHSYGLIDAPKTLADIVESTIGAIYVDSNSSIDTTWEVAKILLEPMITPEMLQQNPVRKLNELCHKKKLKIRFRDKWSKQGVYEVLTGDQLIGRGEYKAKKEIAVNRAAEDACNNILNTMDDKNIITETEE 301
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00421 301 Gene3D - 229 292 - -
Chna2g00421 301 ProSiteProfiles Ribonuclease III family domain profile. 59 199 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 SUPERFAMILY RNase III domain-like 58 219 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 ProSitePatterns Ribonuclease III family signature. 92 100 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 Pfam Double-stranded RNA binding motif 226 285 IPR014720 -
Chna2g00421 301 FunFam Endoribonuclease dicer-like 1 53 220 - -
Chna2g00421 301 Gene3D Ribonuclease III domain 53 228 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 PANTHER DICER-RELATED 28 289 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Chna2g00421 301 Pfam Ribonuclease III domain 92 198 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 SMART riboneu5 74 222 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 CDD RIBOc 75 222 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chna2g00421 301 SUPERFAMILY dsRNA-binding domain-like 181 286 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00421 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:26473679 Chna7g03065 Chna-Chr7:269671633 dispersed
Chna Chna-Chr2:26469186 Chna2g00421 Chna-Chr2:26473679 tandem