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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00499 ATGTATAGTTTTGTTTTCCGAAAAATATATACTAGTAGTATCGCTGGTGGTGAAAGAAAGATTTTTCAGGCATTTGTTTGTGCAAACCTAAGCTCTATCCGTAGAAAACCTTTTCTTGGTAATTTATCGTCTCCGGCTAGTGCTTCAAAAGGCTTACTGGATAAATTTAGACTTGTATTCCAAACTCGATCTGCAACAAGTATGGCAACAAACATGGGAAGTTCATCAAAAGTTCCAGAAAATGAAGTTAATCGCGTTGATATGCTAAATGCTTCTTTTGATAGTTTTGGAGGAGTTACTGTGAACGTTAAAGAAGATATGGATGAAAATATCTTCACCACTTTACTTCGAACATCTATATCTCAGTGGCGGCAGCAGGGAAAGAAGGGTGTTTGGCTTAAACTCACTATTGAACTTGTGAATCTTGTTAAGCCTGCTGTAAAGGAAGGATTTTGGTACCATCATGCTGAGCCAACGTATTTGATGCTTGTGTATTGGATTCCTGAGACTAATCATACCCTACCACCAAATGCTTCACATCGAGTTGGTGTTGCTTCTTTTGTAGTCAACGATAAAGGGGAGCTTCTCGTAGTGCAAGAGAAAAGTGGAGTGTTCAAAGGCACAGGAGTCTGGAAGTTACCAACTGGTACTGTTGAGGAGGGTGAAGATATATCTGTAGCTGCAATCAGGGAAGTGAAAGAAGAGGCTGGTATTGATACAGAATTCGTGGAAGTCCTCGCATTCAGGCAAAGCCACAAGTCATTTTTTAGCAAGTCCGATTTAATGTTTGTGTGTATGCTCAAACCAAAGTCTTCCGTTATCGAGAAACAAGATTCAGAAATTGAAGCAGCACAGTGGATGCCCGTGGAAGAATACGCCAACCAGCCTTTTATAAAGAAGCACAAGTCATTTGACTACATTGCTAAAATATGCATGGCAAAAAAAGATAACAAATATGTTGGTTTTCCTGCTGTGTCTACAGCGACTGCTACATCCGCCAAGAAGAGCTATTTGTATTGCAGTTATCAAGAGGAGTAA 1038 39.79 MYSFVFRKIYTSSIAGGERKIFQAFVCANLSSIRRKPFLGNLSSPASASKGLLDKFRLVFQTRSATSMATNMGSSSKVPENEVNRVDMLNASFDSFGGVTVNVKEDMDENIFTTLLRTSISQWRQQGKKGVWLKLTIELVNLVKPAVKEGFWYHHAEPTYLMLVYWIPETNHTLPPNASHRVGVASFVVNDKGELLVVQEKSGVFKGTGVWKLPTGTVEEGEDISVAAIREVKEEAGIDTEFVEVLAFRQSHKSFFSKSDLMFVCMLKPKSSVIEKQDSEIEAAQWMPVEEYANQPFIKKHKSFDYIAKICMAKKDNKYVGFPAVSTATATSAKKSYLYCSYQEE 345
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00499 345 Pfam Nudix hydrolase domain 89 167 IPR040618 -
Chna2g00499 345 ProSiteProfiles Nudix hydrolase domain profile. 179 311 IPR000086 -
Chna2g00499 345 FunFam Nudix hydrolase 8 181 319 - -
Chna2g00499 345 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 181 319 - -
Chna2g00499 345 PANTHER NUDIX HYDROLASE RELATED 61 343 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Chna2g00499 345 Pfam NUDIX domain 180 301 IPR000086 -
Chna2g00499 345 ProSitePatterns Nudix box signature. 216 237 IPR020084 GO:0016787(InterPro)
Chna2g00499 345 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 139 157 IPR003293 -
Chna2g00499 345 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 265 289 IPR003293 -
Chna2g00499 345 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 177 195 IPR003293 -
Chna2g00499 345 SUPERFAMILY Nudix 147 312 IPR015797 -
Chna2g00499 345 Gene3D - 86 171 - -
Chna2g00499 345 CDD Nudix-Hydrolase-12 180 311 - -
Chna2g00499 345 PRINTS NUDIX hydrolase family signature 225 240 IPR020476 -
Chna2g00499 345 PRINTS NUDIX hydrolase family signature 211 225 IPR020476 -
Chna2g00499 345 FunFam nudix hydrolase 2 86 172 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00499 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:34680494 Chna8g03094 Chna-Chr8:208404440 dispersed
Chna Chna-Chr2:34638967 Chna2g00499 Chna-Chr2:34680494 tandem