AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00502 ATGATCAGAGGCGGTGGTGGTGGTAGCAGTGTGGTGAAGAGATATATCGTTGATATGGCCCCAGCAGCTGTAGCAGATGGTTCTGATAAGATTAAACCTAGAGATGTATGCATTGTTGGTGTTGCACGCACACCACTTGGTGGATTTCTTGGTTCTCTTTCATCTTTACCCGCAACCAAACTTGGGTCCATTGCAATTGAATGTGCACTAAAGAGGGCAAATGTTGACCCATCACTCGTAGAAGAAGTTTATTTTGGAAATGTTCTTGGTGCAAATTTGGGACAGGGTCCTGCTCGACAAGCAGCGTTAGGTGCAGGAATTCCTAATACAGTGGTCTCAACATCTGTTAACAAAGTTTGTGCTTCGGGGATGAAAGCAACTATGTTGGCTGCACAGAGTATCCAATTGGGTCAAAATGATATAGTCGTGGCTGGTGGTATGGAAAGCATGTCTAACGTCCCCAAATATATTGCAGAAGCAAGGAAGGGGTCTAAATTTGGACATGACACTCTTGTTGATGGAATCATGAAAGACGGGTTGTGGGATGTTTTCAATGATTTTAAGATGGGAAACGCTGCTGAAATATGTGCAGATACACATGGCTTTACAAGAGAACAACAGGATGATTATGCCATTCAGAGCTTTGAACGTGGTATAGCTGCCAGAGATAGTGGTGCCTTTGCATGGGAAATTGCCCCTGTTGAAGTTCCTGGCCCAAGAGGAAGACCATCGACAATTGTTGACAAAGATGATGATTTGGGGAAGTTTGATGCTGCAAAGTTGAGGAAGCTGCGGCCAGCTTTCAAGGAAGATGGTGGCAGTGTTACTGCCGGCAATTCATCTGGCATAAATGATGGTGCTGCTGCACTTGTCTTGGTAAGTGGGGAGAAGGCGCTTAAGCTTGGGTTGCATGTGATCGCAAAGGTTTCTGGATACGCTGATGCTGAACAGGCACCTGAGTTATTTACAACTACCCCAGCCCTTGCCATACCAAAGGCTATTTCAAGAGCCGGATTGGATGCTTCTCAAATAGATTTCTATGAAATTAATGAAGCATTTGCTGTCGTGGCTCTAGCAAACCAGAAATTGCTTGGTTTGGATTCATCGAAGCTTAATGTACATGGTGGTGGTGTGTCTTTGGGACATCCTCTAGGTTGCAGTGGTGCTCGCATCTTGGTCACTCTTTTGGGGGTTTTGAAGCAGAAAGGTGGCAAATACGGAGCAGCAGGTGTGTGTAATGGAGGAGGAGGTGCATCAGCTTTCGTTGTGGAACTTCTGTAA 1281 45.43 MIRGGGGGSSVVKRYIVDMAPAAVADGSDKIKPRDVCIVGVARTPLGGFLGSLSSLPATKLGSIAIECALKRANVDPSLVEEVYFGNVLGANLGQGPARQAALGAGIPNTVVSTSVNKVCASGMKATMLAAQSIQLGQNDIVVAGGMESMSNVPKYIAEARKGSKFGHDTLVDGIMKDGLWDVFNDFKMGNAAEICADTHGFTREQQDDYAIQSFERGIAARDSGAFAWEIAPVEVPGPRGRPSTIVDKDDDLGKFDAAKLRKLRPAFKEDGGSVTAGNSSGINDGAAALVLVSGEKALKLGLHVIAKVSGYADAEQAPELFTTTPALAIPKAISRAGLDASQIDFYEINEAFAVVALANQKLLGLDSSKLNVHGGGVSLGHPLGCSGARILVTLLGVLKQKGGKYGAAGVCNGGGGASAFVVELL 426
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00502 426 Gene3D - 32 425 IPR016039 GO:0016746(InterPro)
Chna2g00502 426 ProSitePatterns Thiolases signature 2. 372 388 IPR020613 GO:0016747(InterPro)
Chna2g00502 426 NCBIfam acetyl-CoA C-acyltransferase 38 424 IPR002155 GO:0016747(InterPro)
Chna2g00502 426 CDD thiolase 38 424 IPR002155 GO:0016747(InterPro)
Chna2g00502 426 SUPERFAMILY Thiolase-like 35 303 IPR016039 GO:0016746(InterPro)
Chna2g00502 426 PIRSF Ac-CoA-Ac-transf 30 426 IPR002155 GO:0016747(InterPro)
Chna2g00502 426 PANTHER ACETYL-COA C-ACYLTRANSFERASE 35 425 - GO:0003985(PANTHER)|GO:0005739(PANTHER)|GO:0006635(PANTHER)
Chna2g00502 426 FunFam acetyl-CoA acetyltransferase, mitochondrial 31 426 - -
Chna2g00502 426 ProSitePatterns Thiolases active site. 407 420 IPR020610 GO:0016747(InterPro)
Chna2g00502 426 Pfam Thiolase, N-terminal domain 36 295 IPR020616 GO:0016747(InterPro)
Chna2g00502 426 SUPERFAMILY Thiolase-like 306 425 IPR016039 GO:0016746(InterPro)
Chna2g00502 426 Pfam Thiolase, C-terminal domain 304 424 IPR020617 GO:0016747(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00502 K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
58558 Chna2g00502 Chna7g02999
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:34962787 Chna7g02999 Chna-Chr7:264928497 dispersed
Chna Chna-Chr1:252369509 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr2:425157957 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr4:21627313 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr4:139214453 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr6:40755985 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr6:216042374 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr7:88690003 Chna2g00502 Chna-Chr2:34962787 transposed
Chna Chna-Chr2:34962787 Chna7g02996 Chna-Chr7:264854464 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna6g02543 . 228 271 AACT gene family AT5G48230 75.0 3.77e-15 69.7
Chna4g02802 . 275 332 AACT gene family AT5G47720 81.034 1.25e-24 103.0
Chna4g00543 . 1 405 AACT gene family AT5G47720 77.451 0.0 651.0
Chna2g04613 . 7 405 AACT gene family AT5G47720 78.947 0.0 653.0
Chna4g02098 . 7 370 AACT gene family AT5G48230 73.924 0.0 591.0
Chna7g02999 ACH 1 405 AACT gene family AT5G47720 76.961 0.0 657.0
Chna2g00502 ACH 1 405 AACT gene family AT5G47720 77.451 0.0 651.0