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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00518 ATGGGGTGCCAGTGTGATCATTGTGGGGAAGCAAGATCGATGGTGTATTGTCGATCAGATGCAGCCTACTTATGTTTATCATGCGATCGTCTTGTTCATTCTGCAAATGCACTATCAAAACGCCATTCAAGAACACTTGTATGTGATAGGTGCAATTCACAACCCGCAGTTATTAGATGCATAGAAGAAAAAGCATCTCTTTGTCAAAATTGTGATTGGGATGGTCATAATGGTGTAAGCACACATAGTCGACAAACTTTAAATTGCTACTCGGGTTGCCCTTCGGCTGAAGAACTTTCTTCTATCTGGTCGTTTATGTCAGAGTCGATTTCTGTTATTGATTCTACTTGTGAGCAAGGAATGGGTTCAATGTGCATTGCTGATAATAGGCAAGGACCTTCTGCAAGCAATAAGAATCAAGATTTGATTGTCACTAGTGAAACAAAATGTTTACAAAGTGAAAATAATCCAAATGTTTGGATGGGTCCTTCAAGTAGTCGTGTGGGTAATAGGCCTCCAAATGTAGTTCAAGACGCTGGACCCGTAACTTCTTCTTCATCAAAGGTATCACATTCAGGGACAAAAGATCTTGAACAATTTGTTGATGATGATGGTTTATACGTTGACTTTAATATGGATGAAGTTGATTTAAGCATTGAGAATTATGAAGTACTCTTTGGTGTAGGCCATAACGATCCTGAACATCTTTTCGCAAAAGATGGGATTGATAGTTTGTTTGGTGGTGCCGAATCTTCATACGCTGCCAAGGAGTCTTCAACAGGAATGGGAAATCCAGCACAACCAGCATGCAGTAATGCAGCATCAGCTGAGTCATTAATAAGCTGCAAAACGGAACCAACCCGCTATGGAAGGCAACACTCGAATATCTCGTTCTCAAGTCTAACTGGTGAGAGCACTGCTGGTGATTATCAAGACTGTGGAGCTTCTTCAATGCTTCTTATGGCTGAACCACCATGGGGCCCCACAGGTCCTGATCAAAGCGCCACGCCAATTGGTAGCAGAAGTGATGCTGTCCTCCGTTACAAAGAAAAAAAGAAGATGCGCAAGTGA 1071 41.92 MGCQCDHCGEARSMVYCRSDAAYLCLSCDRLVHSANALSKRHSRTLVCDRCNSQPAVIRCIEEKASLCQNCDWDGHNGVSTHSRQTLNCYSGCPSAEELSSIWSFMSESISVIDSTCEQGMGSMCIADNRQGPSASNKNQDLIVTSETKCLQSENNPNVWMGPSSSRVGNRPPNVVQDAGPVTSSSSKVSHSGTKDLEQFVDDDGLYVDFNMDEVDLSIENYEVLFGVGHNDPEHLFAKDGIDSLFGGAESSYAAKESSTGMGNPAQPACSNAASAESLISCKTEPTRYGRQHSNISFSSLTGESTAGDYQDCGASSMLLMAEPPWGPTGPDQSATPIGSRSDAVLRYKEKKKMRK 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00518 356 Pfam ANCHR-like B-box zinc-binding domain 47 78 - -
Chna2g00518 356 MobiDBLite consensus disorder prediction 321 356 - -
Chna2g00518 356 CDD Bbox1-BBX-like 47 87 IPR049808 -
Chna2g00518 356 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270(InterPro)
Chna2g00518 356 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 355 - -
Chna2g00518 356 SMART bboxneu5 48 87 IPR000315 GO:0008270(InterPro)
Chna2g00518 356 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Chna2g00518 356 CDD Bbox1-BBX-like 5 47 IPR049808 -
Chna2g00518 356 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00518 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58561 Chna2g00518 Chna7g02991
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:35825785 Chna7g03152 Chna-Chr7:276229396 dispersed
Chna Chna-Chr2:31006577 Chna2g00518 Chna-Chr2:35825785 transposed
Chna Chna-Chr2:35825785 Chna5g00932 Chna-Chr5:46255105 wgd
Chna Chna-Chr2:35825785 Chna7g02991 Chna-Chr7:264682553 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna2g00659 ACH 1 298 C2C2-CO-like Transcription Factor family AT1G78600 50.0 4.87e-81 244.0
Chna2g02210 . 272 399 C2C2-CO-like Transcription Factor family AT1G68520 39.333 1.17e-20 90.5
Chna8g01055 . 8 357 C2C2-CO-like Transcription Factor family AT2G33500 33.578 3.39e-47 164.0
Chna9g02965 . 270 386 C2C2-CO-like Transcription Factor family AT5G24930 35.246 4.51e-12 65.1
Chna8g01764 ACH 4 97 C2C2-CO-like Transcription Factor family AT5G54470 56.842 4.11e-32 114.0
Chna2g02536 ACH 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.896 6.87e-77 238.0
Chna2g02822 . 281 401 C2C2-CO-like Transcription Factor family AT1G68520 26.446 8.10e-06 45.8
Chna6g00891 . 5 221 C2C2-CO-like Transcription Factor family AT3G21150 29.06 1.61e-18 79.3
Chna6g01444 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.643 8.30e-75 231.0
Chna00038254g00005 . 1 322 C2C2-CO-like Transcription Factor family AT1G75540 42.136 1.63e-67 212.0
Chna7g03152 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.933 6.17e-132 379.0
Chna4g01991 ACH 1 347 C2C2-CO-like Transcription Factor family AT3G02380 52.073 3.51e-118 345.0
Chna1g01977 . 200 270 C2C2-CO-like Transcription Factor family AT2G24790 40.845 8.21e-11 58.5
Chna2g01371 . 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.857 1.06e-63 198.0
Chna3g03024 ACH 233 333 C2C2-CO-like Transcription Factor family AT5G15850 37.864 7.45e-13 66.6
Chna5g02956 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 52.174 1.23e-10 60.1
Chna2g01011 . 338 385 C2C2-CO-like Transcription Factor family AT5G24930 50.0 2.38e-09 55.1
Chna00039723g00002 . 272 399 C2C2-CO-like Transcription Factor family AT1G68520 39.333 1.17e-20 90.5
Chna3g03829 . 4 272 C2C2-CO-like Transcription Factor family AT2G24790 48.611 9.67e-82 247.0
Chna6g01078 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 47.692 9.40e-49 154.0
Chna5g00855 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.482 5.27e-93 276.0
Chna2g00298 . 1 206 C2C2-CO-like Transcription Factor family AT1G75540 52.857 1.06e-63 198.0
Chna1g00622 . 8 182 C2C2-CO-like Transcription Factor family AT2G47890 53.093 2.15e-66 209.0
Chna5g05037 . 334 388 C2C2-CO-like Transcription Factor family AT5G24930 47.273 1.11e-10 61.6
Chna7g03856 ACH 285 399 C2C2-CO-like Transcription Factor family AT1G68520 45.69 7.48e-21 92.0
Chna2g02600 . 9 355 C2C2-CO-like Transcription Factor family AT5G57660 42.623 1.28e-76 238.0
Chna6g01993 . 10 303 C2C2-CO-like Transcription Factor family AT1G68190 36.023 2.56e-58 192.0
Chna00038520g00031 . 4 97 C2C2-CO-like Transcription Factor family AT5G54470 54.639 4.57e-31 111.0
Chna7g03805 ACH 7 355 C2C2-CO-like Transcription Factor family AT5G57660 46.684 2.06e-93 282.0
Chna4g02917 . 286 331 C2C2-CO-like Transcription Factor family AT5G15850 52.174 1.64e-09 55.5
Chna9g01597 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 50.798 2.65e-117 343.0
Chna5g00932 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 57.143 2.92e-139 399.0
Chna6g01138 ACH 4 105 C2C2-CO-like Transcription Factor family AT5G54470 50.485 2.00e-28 104.0
Chna5g00580 . 1 106 C2C2-CO-like Transcription Factor family AT4G27310 53.774 1.97e-31 111.0
Chna7g02991 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.933 6.17e-132 379.0
Chna2g00518 ACH 1 331 C2C2-CO-like Transcription Factor family AT5G48250 50.266 2.80e-99 296.0
Chna7g03097 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.09 1.22e-95 282.0
Chna9g01712 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.064 1.04e-117 344.0
Chna4g02226 . 263 372 C2C2-CO-like Transcription Factor family AT3G07650 62.727 1.70e-37 140.0
Chna00001573g00021 . 1 322 C2C2-CO-like Transcription Factor family AT1G75540 42.136 6.35e-67 212.0
Chna7g03076 . 1 224 C2C2-CO-like Transcription Factor family AT1G75540 49.785 1.31e-65 206.0
Chna2g00454 . 1 331 C2C2-CO-like Transcription Factor family AT5G48250 50.266 2.80e-99 296.0