AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00566 ATGGCAGAGAAAAGAGATAAAAGTGAAGTTGTGGCTACACAAAGCTCTGAAATGGGACCATGTCTTGATGATGGAAGTTCGAGTATTCGAACCGCTGAGACGCTCTTGAGGTTGTTTCCTGTTGGACTATGTGTGGCTGCTCTTGTTGTCATGCTTAAGGATTCTGAGTCTAATGAATATGGTGCTTTAGCCTACTCCAACATCACTGCTTTCAGGTTTTTGGTGCATGCTAATGGCATATGTGCTGGTTATTCGCTACTATCGGCTGCTTACACGGCAATGCCTCGCCCTATAACCATGCCTCGAGCTTGGACCTTCTTCCTCCTTGACCAGGTCTTAACATACCTCATACTGGCTGCTGGTGCGGTGGCTACTGAGGTGGCATTTCTGACGTACAAAGGAGATGTGGCAGTGACATGGAGTGAGGTATGCGGGACCTACGGCCACTTTTGTAGACAAGCAACCGCGTCAATCATCATCACTTTTATGGTGGTGCTTTGCTACGTTTTGTTATCTCTTATCTCGTCGTATAGGCTCTTCAGCAAGTTTGATGCACCTGTAGGCTACCGTAACAAGGGGATCGAGATTGTTGACTTTGGAAATTAA 606 46.53 MAEKRDKSEVVATQSSEMGPCLDDGSSSIRTAETLLRLFPVGLCVAALVVMLKDSESNEYGALAYSNITAFRFLVHANGICAGYSLLSAAYTAMPRPITMPRAWTFFLLDQVLTYLILAAGAVATEVAFLTYKGDVAVTWSEVCGTYGHFCRQATASIIITFMVVLCYVLLSLISSYRLFSKFDAPVGYRNKGIEIVDFGN 201
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00566 201 PANTHER CASP-LIKE PROTEIN 4A4 24 181 - -
Chna2g00566 201 Pfam Casparian strip membrane protein domain 27 167 IPR006702 -
Chna2g00566 201 NCBIfam plant integral membrane protein TIGR01569 36 177 IPR006459 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00566 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:39530633 Chna6g03836 Chna-Chr6:327495880 dispersed
Chna Chna-Chr2:39530633 Chna2g00572 Chna-Chr2:39713543 proximal