AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00610 ATGTCTTCTTCACTAGTCCCTTTAACGTCCACATTCACTTCACTCCCATCTAAACAATTTGCCACATCCACCAACTCACAATTCATCTCCAAGGCTAGAACCAACCAAACCCATGGTTTCAAAGTCTCATGCAATGCTTCACCTGAAGACAATGAGAACCAACTCATACTACCCGAAACACAAAAGCTTATACTACCCAATAATGTAGACCGAAGGAACCTCCTCGTGGGGCTTGGCGGCCTGTGTACGGCCGCCAGCCTTACTTCACTCCCGTCAGCCTTTGCTAGTCCCATTACGGCTCCTGATATCACGAACGTATGCAAGGACTCAGCATCAGGCTTTAACACTGCTACTGCTATAAGGACAGGGAAATGCTGCCCTCCTAGCATTGGGAAGAAGGTTAAACCGTTTAAGTTTCCTAGAGAAAATATAACTCGAGTCCGATGGCCCGCACATTTGGGGACAAAACAGCAAGTGGATAAATACTTGAAAGCCATAGCAGCCATGAGGGCTCTCCCAGATGACCACCCGCACAGCTTCGCAAGCCAAGCTAAGATTCATTGTGCTTATTGTAACGGCGGTTATACTCAAGTCGATAGCGGCTTCCCTGATATCGATATCCAGATTCATAACTCGTGGCTCTTCTTCCCGTTCCATCGTTGGTACCTATATTTCTACGAGAGAATTCTCGGGAAATTGATCAATGATCCCACGTTCGCTTTGCCTTACTGGAACTGGGACGATCCTGTTGGCGGAATGACGATTCCAGACTTTTTCTTACCAGAAAACAGCCCTGCTTATGATGTTTACCGTGATGCTCGTCACAAGCCACCACTACTAGTTGATCTCGCCTTTGATGGCCGTGAGCGTGACGTTTCAAATGAAGTACAAAAACAATGTAATCTTAGCACTGTGTACCGAGATTTGGTGAGAAATGGAACTGATTCAAAGAGTTTCTTTGGAGGCGAATACGTAGCTGGGGATGCGCCTGTTGCAAATGGTGCCAAGTCGATTGGATCGGTCGAAGCTGGGACTCACACGGCTGTGCATAGATGGGTTGGTGACTCGACACAGCCTAATAATGAGGACATGGGTAACTTCTACTCCGCGGGGTATGACCCTGTGTTTTACATCCATCATTCGAATGTCGACCGTATGTGGAAACTCTGGAAGGATTTGGGCATTAAAGGACACAATGAACCGAGAGCTAAGGATTGGCTAGATGCATCATATGTGTTCTATGATGAGAATGAGGACCTTGTTCGTGTCTACAACAAAGATTGTGTCAATTTGAATAAGCTGAACTACGAGTACTTTGTGACAAAGGGTGAGATCGCATGGCGCAAGAGTCGACCTGGAAAACGTAACAAAAATGTGAAACGTCCAACAGTACCAATTGCAAAGGTGAAAACCGTGGAGCAACTGAGGTTCCCGGTTGGTGTAGACCCAGAGTTGAAGGTTCGTGTGAAGAGGCCAGCTGTGAACAGAACTGAAGCCCAGAAAGCACAAGCGAACGAGATTTTGATGATAAATGGAATAAGATTCAACAGTAACAAGTTTGTCAAGTTCGATGTGTTTGTGAATGACAATGTCGAGGATGGAACACTTACCACGCCTTGTGATCCGGAGTACGCGGGTGGTTTTTCACAAGTTCCACACAACGATAATATGAAAATGTTGATGACAAGTGCAGCTAGGTTCGGGTTAGATGAGATATTAGAGGACACAAATACTGAAGGCGAAGAATATGCATTGGTGACATTGGTCGCTAGGGCTGGCTGCGACGATGTCACGGTTGCGGACATCAAGATCGAGTTGGTTCCTATTGAGGATTAA 1836 46.13 MSSSLVPLTSTFTSLPSKQFATSTNSQFISKARTNQTHGFKVSCNASPEDNENQLILPETQKLILPNNVDRRNLLVGLGGLCTAASLTSLPSAFASPITAPDITNVCKDSASGFNTATAIRTGKCCPPSIGKKVKPFKFPRENITRVRWPAHLGTKQQVDKYLKAIAAMRALPDDHPHSFASQAKIHCAYCNGGYTQVDSGFPDIDIQIHNSWLFFPFHRWYLYFYERILGKLINDPTFALPYWNWDDPVGGMTIPDFFLPENSPAYDVYRDARHKPPLLVDLAFDGRERDVSNEVQKQCNLSTVYRDLVRNGTDSKSFFGGEYVAGDAPVANGAKSIGSVEAGTHTAVHRWVGDSTQPNNEDMGNFYSAGYDPVFYIHHSNVDRMWKLWKDLGIKGHNEPRAKDWLDASYVFYDENEDLVRVYNKDCVNLNKLNYEYFVTKGEIAWRKSRPGKRNKNVKRPTVPIAKVKTVEQLRFPVGVDPELKVRVKRPAVNRTEAQKAQANEILMINGIRFNSNKFVKFDVFVNDNVEDGTLTTPCDPEYAGGFSQVPHNDNMKMLMTSAARFGLDEILEDTNTEGEEYALVTLVARAGCDDVTVADIKIELVPIED 611
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00610 611 ProSitePatterns Tyrosinase CuA-binding region signature. 210 227 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PANTHER TYROSINASE FAMILY MEMBER 69 557 IPR050316 -
Chna2g00610 611 Pfam Protein of unknown function (DUF-B2219) 477 606 IPR022740 GO:0004097(InterPro)
Chna2g00610 611 Pfam Common central domain of tyrosinase 178 392 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PRINTS Tyrosinase copper-binding domain signature 372 390 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PRINTS Tyrosinase copper-binding domain signature 345 356 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PRINTS Tyrosinase copper-binding domain signature 210 227 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PRINTS Tyrosinase copper-binding domain signature 241 246 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 Pfam Polyphenol oxidase middle domain 404 452 IPR022739 GO:0004097(InterPro)
Chna2g00610 611 SUPERFAMILY Di-copper centre-containing domain 121 438 IPR008922 -
Chna2g00610 611 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 373 384 IPR002227 GO:0016491(InterPro)
Chna2g00610 611 PIRSF PPO-plant 1 608 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Chna2g00610 611 Gene3D - 96 440 IPR008922 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00610 K00422 polyphenol oxidase [EC:1.10.3.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
58579 Chna2g00610 Chna5g00903
58580 Chna2g00610 Chna7g02916
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:42312998 Chna5g04515 Chna-Chr5:312182237 dispersed
Chna Chna-Chr2:42062996 Chna2g00610 Chna-Chr2:42312998 tandem