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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00686 ATGGCTACTTCTTCGCTCTCGTTTATACTCTTATGTTTAATCATATCATTCTCAATAACGAATGCCATTGTTCCTTCCAATGAGACCTTCCGTTATGTCAACCAAGGTGATTTTGGAGAATTCCAACTTGAGTCTGAATACACCCCAACCTATCGTCCCCTTGATCCATTTACCTTCCCTTTTCAGCTTTGTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGACAAGACGTGATGGATCTCTCATGCGATGGGTCTGGGAAGCCAACCGTGGCTTCCCAGTACGAGAAAATGCCACGTTTTCATTAGGTTCCGATGGAAACCTAATTTTGGCTGAATCAACAGGCCAGGTCGTGTGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCATAGAGTCAGATGGTAACATCGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAAAGTTTTGACTCACCTACCGACACTCTCTTGGTGGGCCAAACTTTACGAATTAACGGAGGCCCGGTCAAGCTCGTGAGTAGGGATTCGATCACTAACAACGTTAACGGAGCATATAGTTTCGTAATAAAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACTTTCCCCGAATTAAACCGAGCAAATGTGACGTTAGTTAATGCAACATTACGCATCGCAGAAACCGACTATGAAGAGAACAATTTTCATGTATGA 747 43.78 MATSSLSFILLCLIISFSITNAIVPSNETFRYVNQGDFGEFQLESEYTPTYRPLDPFTFPFQLCFYNTTPNAYYLGLRMGTRRDGSLMRWVWEANRGFPVRENATFSLGSDGNLILAESTGQVVWQTNTANKGVVGFAIESDGNIVLKDSSGNFVWQSFDSPTDTLLVGQTLRINGGPVKLVSRDSITNNVNGAYSFVIKPKRLALYYKNSMRYWSSTFPELNRANVTLVNATLRIAETDYEENNFHV 248
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00686 248 SMART blect-4 45 162 IPR001480 -
Chna2g00686 248 ProSiteProfiles Bulb-type lectin domain profile. 39 160 IPR001480 -
Chna2g00686 248 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 61 231 IPR051343 -
Chna2g00686 248 Pfam D-mannose binding lectin 91 175 IPR001480 -
Chna2g00686 248 CDD B-lectin 45 162 IPR001480 -
Chna2g00686 248 Gene3D - 61 161 IPR036426 -
Chna2g00686 248 SUPERFAMILY alpha-D-mannose-specific plant lectins 86 217 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00686 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:52082959 Chna2g00689 Chna-Chr2:52310239 dispersed
Chna Chna-Chr2:52082959 Chna2g00688 Chna-Chr2:52247791 proximal