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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00694 ATGGCTGCTGAACGTGAAAATTTCATCTATATTGCTAAGCTTGCTGAACAAGCTGAACGTTATGACGAGATGGTTGATGCCATGAAGAAAGTAGCAAAGTTGGATATCGAATTGACTGTTGAGGAAAGAAACTTGTTGTCAGTTGGATACAAGAATGTGGTGGGTTCACGTAGGGCATCGTGGAGGATATTATCTTCCATTGAGCAAAAAGAGGAGTCAAGAGGCAATGAAGTTAATGTAAAGCGGATTAAGGAATATAGGCAGAAGGTGGAAACCGAGTTGTCTGACATTTGTGGTGATATCATGACTGTTATTGATGAGCATCTGATTCCATCTTCATCAGCTGGAGAATCCACTGTTTTCTACTATAAGATGAAGGGAGATTACTTTAGGTATCTTGCAGAGTTCAAGTCTGGTAATGACAAGAAAGAGGCAGCTGATCAGTCGCTGAAGGCTTATCAATTGGCCTCTACTGCTGCAGAGGATTTATCTCCTACTCATCCTATCCGATTGGGTTTGGCTTTGAACTTCTCAGTTTTCTATTATGAGATCATGAACTCTCCTGAAAGAGCCTGCCACTTGGCGAAACAAGCTTTTGATGAAGCTATCTCAGAGCTCGACTCCTTGAGCGAGGAGTCATACAAAGACAGCACTTTGATTATGCAGCTCCTGAGGGATAACCTCACTTTGTGGACTTCTGATATTCCAGAAGATGGAGAAGACCAAAAGATGGAGATCACCAAATCTGGTGCAGATGATGAAGAGGGTAACTCTGCATCCTTGGAGTGGATGTGGCCTTTGGTATTGTATTGTTGTAAAATGCCCGGCAATGGGACGTTTATGGCATGCCCTCAGATTTTATGA 864 42.59 MAAERENFIYIAKLAEQAERYDEMVDAMKKVAKLDIELTVEERNLLSVGYKNVVGSRRASWRILSSIEQKEESRGNEVNVKRIKEYRQKVETELSDICGDIMTVIDEHLIPSSSAGESTVFYYKMKGDYFRYLAEFKSGNDKKEAADQSLKAYQLASTAAEDLSPTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDQKMEITKSGADDEEGNSASLEWMWPLVLYCCKMPGNGTFMACPQIL 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00694 287 SUPERFAMILY 14-3-3 protein 4 234 IPR036815 -
Chna2g00694 287 PIRSF 14-3-3 1 245 IPR000308 -
Chna2g00694 287 PANTHER 14-3-3 PROTEIN 4 237 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Chna2g00694 287 FunFam 14-3-3 protein epsilon 1 245 - -
Chna2g00694 287 Coils Coil 11 31 - -
Chna2g00694 287 Pfam 14-3-3 protein 12 232 IPR023410 -
Chna2g00694 287 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 205 234 IPR000308 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 178 204 IPR000308 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 151 177 IPR000308 -
Chna2g00694 287 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Chna2g00694 287 SMART 1433-4 5 245 IPR023410 -
Chna2g00694 287 Gene3D - 1 247 IPR036815 -
Chna2g00694 287 Coils Coil 192 212 - -
Chna2g00694 287 ProSitePatterns 14-3-3 proteins signature 2. 214 233 IPR023409 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00694 K06630 14-3-3 protein epsilon
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Event-related genes

Select Gene_1 Gene_2 Event_name
58593 Chna2g00694 Chna5g00767
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:53583759 Chna6g01817 Chna-Chr6:113340035 dispersed
Chna Chna-Chr2:53583759 Chna5g00767 Chna-Chr5:37422391 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna6g01817 ACH 6 264 14-3-3 family AT1G26480 82.239 1.41e-159 442.0
Chna4g03958 . 9 141 14-3-3 family AT1G78300 34.328 1.24e-07 50.4
Chna2g00694 ACH 6 263 14-3-3 family AT2G42590 77.519 6.57e-147 410.0
Chna00040133g00028 . 192 255 14-3-3 family AT5G38480 55.714 1.28e-17 78.6
Chna6g04347 . 8 244 14-3-3 family AT1G26480 60.338 8.44e-108 311.0
Chna4g03370 . 9 141 14-3-3 family AT1G78300 30.827 3.77e-07 49.3
Chna5g00767 ACH 2 263 14-3-3 family AT2G42590 76.718 3.38e-150 418.0
Chna1g01590 . 24 209 14-3-3 family AT3G02520 54.286 4.61e-65 200.0
Chna2g02040 . 22 84 14-3-3 family AT1G22300 68.254 1.73e-23 92.0
Chna2g04581 . 75 149 14-3-3 family AT4G09000 51.316 2.08e-20 80.9
Chna9g02540 . 9 262 14-3-3 family AT1G35160 71.26 1.69e-122 346.0
Chna4g03962 . 16 111 14-3-3 family AT4G09000 41.237 8.29e-13 65.9
Chna6g04409 ACH 8 266 14-3-3 family AT1G26480 56.757 5.91e-107 309.0
Chna00040095g00063 . 6 256 14-3-3 family AT1G26480 80.695 1.80e-155 432.0
Chna4g03980 . 16 108 14-3-3 family AT4G09000 43.617 3.16e-13 65.9
Chna9g01393 . 4 257 14-3-3 family AT3G02520 88.976 1.46e-165 457.0
Chna8g01366 ACH 6 256 14-3-3 family AT1G26480 81.673 3.35e-155 431.0
Chna00008121g00011 . 6 256 14-3-3 family AT1G26480 80.695 1.80e-155 432.0
Chna4g01445 . 2 252 14-3-3 family AT5G38480 87.649 1.66e-167 461.0
Chna2g01645 . 24 172 14-3-3 family AT3G02520 78.523 1.51e-84 248.0
Chna00038497g00038 . 11 141 14-3-3 family AT1G78300 37.121 5.30e-11 59.7
Chna1g01681 ACH 3 258 14-3-3 family AT1G78300 72.656 2.00e-128 361.0
Chna4g03955 . 9 141 14-3-3 family AT3G02520 31.343 8.58e-09 54.3
Chna00039044g00119 . 4 257 14-3-3 family AT3G02520 88.976 1.46e-165 457.0
Chna4g02734 ACH 1 202 14-3-3 family AT5G10450 40.594 7.91e-46 149.0
Chna6g04448 . 8 251 14-3-3 family AT4G09000 56.275 3.22e-92 273.0
Chna2g03384 . 23 150 14-3-3 family AT1G34760 60.465 6.32e-48 161.0
Chna00002394g00033 . 128 208 14-3-3 family AT2G42590 54.321 1.23e-25 96.7
Chna2g02426 . 24 209 14-3-3 family AT3G02520 55.238 4.85e-67 205.0
Chna00039031g00023 . 1 247 14-3-3 family AT5G65430 84.615 4.78e-159 439.0