AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00698 ATGGGTGATGAAAAAGAAGTAAAAAATGATGAGAAAACTGAAAAGGGTTTAAAGAGTAAGAAGAAGAGAAAGGGTATTTTGGGAAGGATTTGGACTAGTTTGTTTAGGTTGGGTGGTGGTGATGATTTTGAGAAAAGGTTGCAATATATTACTAAAGAGGAAGGGAGTATTGTTATGAGGATGAAGAGGCGGGCTATGCGGTGGAGGAGGACTGCGCGCAATTTGATTATATTTTCGGTTCTTATTGAGAAATACGACCCTGACCCAGCAGCAAAAGCAGCTGCTGCATCTGTCCTTGCATCCAAATTGGGCGCGGATTCAGGCCTAAAAGTGTTTCTTGGGGACGAATCACAACAGAACCCATACGCCACAGGGAAGAGCAGTGATGCTGAGCTTCAACAATCCACTGGTCTTCGTAAACGAAATCAATCGAATACTCGATCTTCTGGAAGCAATGCAGGTCAACAATCCGCTAAAGAAGTGGCTCAATATGAAGAAAATGAGATTTCTGAGAATTCACCACACGGGCAGCTTGTTGTTAATCATCATAATGCTACATCTTTAGGTGCTCAAGATGGTGGTTGGATTGCTCGAATTGCTGCATTGCTTGTGGGAGAGGACCCCACACAATCGTACGCCCTCATATGTGGCAATTGCCATATGCATAATGGTCTTGCAAGAAAAGAGGAATTCCCCTTCATCACTTATTATTGTCCCCATTGCAATGCTCTGAATAAACCAAAGGACTCGGTACTACCTTCAAATATAATGTCTCCTGTTTCGGGATCTTCACCGGTAGCAAGCGCAGGTGTTAATTTGATTGAACAACATAAGGAGTCAAAAGTTGAGAAAGAATCTGCTGCTAGCAGTCCCGTGGCCGATGTGGTGGAAGAGAAAGATGCAACTGAAACTAAACTGACTGAGGATCCTTCTAGTCATTAG 942 43.21 MGDEKEVKNDEKTEKGLKSKKKRKGILGRIWTSLFRLGGGDDFEKRLQYITKEEGSIVMRMKRRAMRWRRTARNLIIFSVLIEKYDPDPAAKAAAASVLASKLGADSGLKVFLGDESQQNPYATGKSSDAELQQSTGLRKRNQSNTRSSGSNAGQQSAKEVAQYEENEISENSPHGQLVVNHHNATSLGAQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEEFPFITYYCPHCNALNKPKDSVLPSNIMSPVSGSSPVASAGVNLIEQHKESKVEKESAASSPVADVVEEKDATETKLTEDPSSH 313
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00698 313 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 195 245 IPR019273 -
Chna2g00698 313 MobiDBLite consensus disorder prediction 118 172 - -
Chna2g00698 313 MobiDBLite consensus disorder prediction 296 313 - -
Chna2g00698 313 MobiDBLite consensus disorder prediction 271 313 - -
Chna2g00698 313 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 20 83 IPR040115 GO:0071782(PANTHER)|GO:0071786(PANTHER)|GO:0071786(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00698 K23292 endoplasmic reticulum junction formation protein lunapark
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
58597 Chna2g00698 Chna5g00764
58598 Chna2g00698 Chna7g03114
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:53995582 Chna5g00764 Chna-Chr5:37372111 wgd
Chna Chna-Chr2:53995582 Chna7g03114 Chna-Chr7:273896908 wgd
Chna Chna-Chr2:53995582 Chna7g03182 Chna-Chr7:279562280 wgd