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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00702 ATGAAGGGGCATTATAAGTCTTTAAAGGTGTTATTGAGCCGTCGTAGCGGGAATTTGCATGGTGATGGTTTTGAGGGTTCAGTGAACGAGGATCATATATTTAAGAATGTGTTCTATGAATATGAAAGTGGTAGAAGAAGCAAAAAGTATGATGTAACTGGAGCAATAAATTTTGAAAGTGATGAAAAGATGCCTAAAAATACCCCTATCTGTTCAGAGAGTGATAATTCAGTTATGACAGTTCAGGAAGACTTTCAGAACACGAAGGAAGATGATAGACATGGGGGCATCTCTGAAGAGCTTGCTTTAGTTACGAGGAATGCCCCTGACGTTGAAGTGAAGCGAGTTAAGGTGTCATTTGGAGGACATTCTTACACTAAATCTTATCTAGAAAAGGTAATTAAGTCTCCGGCTCCATTAAAAGAAGTTGATTCTTGTTTATTCCAACCAACTACGTTAGTAACATCTTTGGCTGAATCATCGGAACATATTGGAGATATGGTAGACAATAATGTTCTCGGCTGTATTGACCCAAATGATGGAAAGATATGTGATGTGAAGATGAAAGTACCTAAGAAAAGATGGAAAGATAGTTCATTTCTAGAAATTAGTACTGATGAATTTTCAGTTCCCCCTGAAGATTCTACAATGAATCCTAAGCCTCTTTTGCGTTATCACACCTATCGCTTACTTATAGCAGCTGGTTGGGCAGTCGGTAAGCGTAACAGGGTGCTTCCCAATGAAGGCCGTGGAGAGTATATGTTCAAAACTCCCGAAGGAAGGCCAATTCGGGAATTTCATAGAGCTTGGAATATGTGTGGGGAAAGGTTATACAACGATGCAATATTTGTTGGTGAATATAATGCCATGCGGTGGACTGATTATACTGCATTCCAGTATGATCTTTATAATGCATATGCCGAGGTCGAAGAAATGAGGAATTCAGGATCCACAATTGACTTAGCTCGTTGTTGGTACTTGCTTGATCCCTTTGCGACATCAGTGTTTATTACCAAGAGTTGGACCAATCTGAGAGCAGGAAAAGAAGTCAGCGCAGAGAGAGGTGTGGTCAACCATCCTGAAAGTTCCAAGAGCCCGGTCAGATGTGAGAAGCCTAGTATTATTATTAAACATAAAAGGGAGAAAAAAAGGAATTTTCGCTATAAGGATGATGAATTTTTACTCTCAGATGTATCAAGTAAACAATCTTCCAACAAAAGGTCATATGTGAAAAATAACAAAGATGTATCAAGTAACCAATACAAACGGTCATATGTGAAAAGGAACTCTCATGTTCCAAAAGCTGTTAGAAAGTACAAGACTAAAAAAGGTGGTTGCAGGTTGCTTCCACGCAGTGCAAAGCCGTCAAAGTTTTGTGTAAGAACGGTGTTGTCATGGTTGATAGATCATGGGATTATTTATGTCAAAGAGTCGATCGAGTACAGGAACCCCCAGGATAATTCAGTTGTGAAGAAGGGTCTAGTTAACCGAAGGGGTATTTTTTGTCTGTGTTGTAAGAAGGCGATCTCTCTGTCCGAGTTCAATAAACATGCTGATTTTAGCTCCAACGGCTCTTGTTTGAATCTTTTTATGAAGTCTGGAAAACCATTCACTTCATGCCTATTGGAAGCCTGGTCAAATGAATCCAATGTCAGGAGAAATGCAAAACGAGCTGCTGTATCGTTTAAGGGGAATGACCAGAGTGATGATAGTTGCGGCCTTTGCGGCGATGGAGGTGACTTGATATGCTGTGATAATTGCCTTTCAACATTTCATCAATCATGCTTGTCTACACCGGAGTTACCTGAAGGCAGTTATTATTGCTTAAAGTGCTGTTGTGGGAGTTGCGGGAATGTAGTCAGACATAAGGAGGCTCCAGTCTCAAATTCTTTGAAATGTTTGCAGTGCGAACACAAATATCACAAGAGATGCACCAAAGGGAAAGGGATTAAGAAAAAGTTGGTAGGTTCTACGTGGTTCTGTGGAGAAACATGTGAGAAGATCCATTCAGATCTTGATTCCCGGATTGGACGTGTGAATCCAATTTCTGATGGTTTCTCGTGGACCCTTCTGAAGTGTATTCATGGTGACGAAAGGGTTAATTCTGCACAGGATTATGTTGCCCTGAAGGCAGAATGCAATTTAAAACTAGCTGTTGCCCTTACAATCATGGAGGAATGCTTTGTTCCTATGGTGGATACGAGGACAGGTATCCATATGCTACCGCATGTATTGTACAATTGGGGATCAGAATATGTTCGTCTCAACTATGAGGGATTCTACACAATGGTCCTGGAGAAAGATGACATTTTACTCTGTGTTGCATCCTTAAGGATTCATGGTGCAACTGTTGCGGAAATGCCGCTTATTGCAACATGCAGTAGACATAGGCGCCAAGGAATGTGTAGGCGCCTCATGAATGCTATTGAAGAGGTGCTCAAGTCCTCCAAAGTCGAAAAGCTAGTGATATCTGCCATCCCGGACTTAGTTGAGACATGGACAGAAAGGTTTGGTTTTTTACCCTTGGAAGCCGATGAGAAGAAGAGCCTGGAAAAAAGCAACCTCATGGTGTTCCCAGGAACAGTATGGCTCAAGAAGCCCCTGAATCAGGATTCAACCCAGGGCAATCACCTTCTTGATGAACCCCACTGCTCTCAAAGGACTTTTGGTGGAGGTGGCGAAACAGATGGGTCAGGTACATCAATAGACGCTGTTGAGTCAGACCGGCTCGATATGGTGGCTGTTGAGTGCAAGGAATTCTTGCAAGATGGTGTAAATTGTGATGATAAGTTGGTAGAGCAAGTTTCAGTTTTCTCATGTGATATATCAACATCAAAGATGGAAGTAAGTTTACTTGAATCAGCTTGTGATGTTGAACCAACTTTGCTGTATAATGACAAGGATCTTTGA 2910 41.34 MKGHYKSLKVLLSRRSGNLHGDGFEGSVNEDHIFKNVFYEYESGRRSKKYDVTGAINFESDEKMPKNTPICSESDNSVMTVQEDFQNTKEDDRHGGISEELALVTRNAPDVEVKRVKVSFGGHSYTKSYLEKVIKSPAPLKEVDSCLFQPTTLVTSLAESSEHIGDMVDNNVLGCIDPNDGKICDVKMKVPKKRWKDSSFLEISTDEFSVPPEDSTMNPKPLLRYHTYRLLIAAGWAVGKRNRVLPNEGRGEYMFKTPEGRPIREFHRAWNMCGERLYNDAIFVGEYNAMRWTDYTAFQYDLYNAYAEVEEMRNSGSTIDLARCWYLLDPFATSVFITKSWTNLRAGKEVSAERGVVNHPESSKSPVRCEKPSIIIKHKREKKRNFRYKDDEFLLSDVSSKQSSNKRSYVKNNKDVSSNQYKRSYVKRNSHVPKAVRKYKTKKGGCRLLPRSAKPSKFCVRTVLSWLIDHGIIYVKESIEYRNPQDNSVVKKGLVNRRGIFCLCCKKAISLSEFNKHADFSSNGSCLNLFMKSGKPFTSCLLEAWSNESNVRRNAKRAAVSFKGNDQSDDSCGLCGDGGDLICCDNCLSTFHQSCLSTPELPEGSYYCLKCCCGSCGNVVRHKEAPVSNSLKCLQCEHKYHKRCTKGKGIKKKLVGSTWFCGETCEKIHSDLDSRIGRVNPISDGFSWTLLKCIHGDERVNSAQDYVALKAECNLKLAVALTIMEECFVPMVDTRTGIHMLPHVLYNWGSEYVRLNYEGFYTMVLEKDDILLCVASLRIHGATVAEMPLIATCSRHRRQGMCRRLMNAIEEVLKSSKVEKLVISAIPDLVETWTERFGFLPLEADEKKSLEKSNLMVFPGTVWLKKPLNQDSTQGNHLLDEPHCSQRTFGGGGETDGSGTSIDAVESDRLDMVAVECKEFLQDGVNCDDKLVEQVSVFSCDISTSKMEVSLLESACDVEPTLLYNDKDL 969
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00702 969 SUPERFAMILY FYVE-PHD zinc finger 548 612 IPR011011 -
Chna2g00702 969 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 719 869 IPR000182 GO:0016747(InterPro)
Chna2g00702 969 Pfam PHD-finger 572 611 IPR019787 -
Chna2g00702 969 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 758 843 IPR016181 -
Chna2g00702 969 ProSiteProfiles Zinc finger PHD-type profile. 569 614 IPR019787 -
Chna2g00702 969 Gene3D - 731 857 - -
Chna2g00702 969 SMART PHD-3 571 612 IPR001965 -
Chna2g00702 969 SMART PHD-3 613 665 IPR001965 -
Chna2g00702 969 Pfam Tify domain binding domain 493 543 IPR032308 -
Chna2g00702 969 CDD NAT-SF 764 824 - -
Chna2g00702 969 PANTHER PHD FINGER PROTEIN 12 170 878 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Chna2g00702 969 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 559 681 IPR013083 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00702 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58600 Chna2g00702 Chna5g00761
58601 Chna2g00702 Chna7g03116
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:54044437 Chna7g01190 Chna-Chr7:78211372 dispersed
Chna Chna-Chr3:212742651 Chna2g00702 Chna-Chr2:54044437 transposed
Chna Chna-Chr2:54044437 Chna5g00761 Chna-Chr5:37354021 wgd
Chna Chna-Chr2:54044437 Chna7g03116 Chna-Chr7:273911142 wgd
Chna Chna-Chr2:54044437 Chna7g03184 Chna-Chr7:279573747 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna7g02525 . 525 773 PHD Transcription Factor family AT5G58610 36.502 3.77e-41 155.0
Chna00001175g00227 . 690 975 PHD Transcription Factor family AT5G58610 46.154 6.85e-82 278.0
Chna5g02737 ACH 531 973 PHD Transcription Factor family AT2G36720 41.333 4.60e-109 347.0
Chna5g03016 . 520 985 PHD Transcription Factor family AT2G36720 40.34 1.47e-105 335.0
Chna7g03184 ACH 683 929 PHD Transcription Factor family AT3G14980 56.048 7.90e-87 298.0
Chna5g01401 . 1546 1704 PHD Transcription Factor family AT5G35210 28.655 4.19e-12 67.4
Chna7g02524 . 805 963 PHD Transcription Factor family AT5G58610 50.314 3.42e-47 162.0
Chna2g02674 ACH 26 974 PHD Transcription Factor family AT5G58610 37.016 0.0 621.0
Chna00038675g00045 . 611 656 PHD Transcription Factor family AT5G12400 39.583 9.83e-06 47.0
Chna5g03220 . 615 661 PHD Transcription Factor family AT5G22260 44.681 1.64e-06 50.1
Chna3g00976 . 184 1536 PHD Transcription Factor family AT5G35210 41.46 0.0 1035.0
Chna7g02183 . 365 975 PHD Transcription Factor family AT5G58610 34.312 1.17e-96 318.0
Chna4g02322 . 614 640 PHD Transcription Factor family AT5G22260 59.259 2.05e-06 46.6
Chna3g01342 . 253 977 PHD Transcription Factor family AT2G36720 41.91 0.0 608.0
Chna00039178g00001 . 675 760 PHD Transcription Factor family AT4G14920 35.165 4.60e-07 52.8
Chna2g02122 . 45 597 PHD Transcription Factor family AT3G24440 48.511 2.78e-171 498.0
Chna3g03413 . 835 933 PHD Transcription Factor family AT3G14980 60.0 1.59e-33 121.0
Chna2g03486 . 311 925 PHD Transcription Factor family AT1G05380 43.526 3.59e-168 523.0
Chna5g03134 . 635 781 PHD Transcription Factor family AT3G14980 64.189 8.34e-64 217.0
Chna2g00552 . 611 654 PHD Transcription Factor family AT5G12400 41.304 3.68e-07 48.9
Chna4g00865 . 611 656 PHD Transcription Factor family AT5G12400 46.939 7.64e-08 53.9
Chna1g00990 . 130 247 PHD Transcription Factor family AT5G57380 25.373 7.76e-10 61.2
Chna5g04365 . 844 895 PHD Transcription Factor family AT1G05380 76.923 1.73e-23 93.2
Chna2g01180 ACH 718 818 PHD Transcription Factor family AT3G14980 32.812 2.17e-07 53.5
Chna00040116g00003 . 718 883 PHD Transcription Factor family AT1G05380 66.867 1.42e-71 243.0
Chna6g02398 . 841 901 PHD Transcription Factor family AT5G36670 60.656 3.52e-21 84.0
Chna5g00761 ACH 566 1027 PHD Transcription Factor family AT3G14980 56.129 1.32e-179 546.0
Chna6g00458 . 540 975 PHD Transcription Factor family AT5G58610 37.179 7.19e-87 291.0
Chna6g03952 . 720 807 PHD Transcription Factor family AT3G14980 31.25 1.48e-06 47.8
Chna9g02538 . 841 901 PHD Transcription Factor family AT5G36670 62.295 2.30e-23 90.1
Chna8g00299 . 309 1595 PHD Transcription Factor family AT5G12400 40.166 0.0 885.0
Chna9g02255 ACH 675 760 PHD Transcription Factor family AT4G14920 36.264 4.50e-08 56.2
Chna1g01963 . 172 301 PHD Transcription Factor family AT3G53680 46.154 2.08e-28 114.0
Chna2g00702 ACH 541 1023 PHD Transcription Factor family AT3G14980 52.789 5.08e-174 537.0
Chna5g04907 . 1542 1706 PHD Transcription Factor family AT5G35210 85.455 1.90e-86 290.0
Chna1g02324 . 367 997 PHD Transcription Factor family AT4G14920 40.729 3.94e-160 509.0
Chna7g03116 ACH 7 1032 PHD Transcription Factor family AT3G14980 42.022 0.0 762.0
Chna00007322g00003 . 718 883 PHD Transcription Factor family AT1G05380 66.867 1.42e-71 243.0
Chna00040001g00014 . 636 672 PHD Transcription Factor family AT5G36670 59.459 2.67e-08 49.7
Chna6g00485 . 261 973 PHD Transcription Factor family AT2G36720 46.841 0.0 655.0
Chna7g01176 . 145 261 PHD Transcription Factor family AT5G57380 31.783 4.41e-09 57.0
Chna00039015g00033 . 611 656 PHD Transcription Factor family AT5G12400 39.583 9.83e-06 47.0
Chna6g01079 . 685 753 PHD Transcription Factor family AT4G14920 37.838 6.83e-07 52.4
Chna7g01801 ACH 554 973 PHD Transcription Factor family AT5G58610 44.643 2.52e-122 395.0
Chna5g04826 . 1582 1706 PHD Transcription Factor family AT5G35210 82.4 3.69e-70 226.0
Chna6g03949 ACH 720 801 PHD Transcription Factor family AT3G14980 33.036 2.95e-08 56.6
Chna00000852g00010 . 130 217 PHD Transcription Factor family AT5G57380 30.097 4.53e-08 54.3
Chna7g02478 . 223 984 PHD Transcription Factor family AT4G14920 48.774 0.0 706.0
Chna7g01625 . 29 167 PHD Transcription Factor family AT5G58610 26.619 3.69e-08 48.9
Chna00007061g00002 . 81 663 PHD Transcription Factor family AT5G22260 29.564 1.15e-74 253.0
Chna6g02157 . 15 407 PHD Transcription Factor family AT5G22260 30.969 1.18e-56 203.0
Chna3g01205 ACH 172 300 PHD Transcription Factor family AT3G53680 54.264 1.64e-40 154.0
Chna00039494g00007 . 554 973 PHD Transcription Factor family AT5G58610 44.866 3.29e-123 398.0
Chna2g01116 . 130 247 PHD Transcription Factor family AT5G57380 25.373 8.17e-10 61.2
Chna00038858g00004 . 27 160 PHD Transcription Factor family AT5G58610 27.536 1.53e-09 57.0
Chna00038134g00041 . 130 217 PHD Transcription Factor family AT5G57380 30.097 4.07e-08 54.3
Chna7g01190 . 221 996 PHD Transcription Factor family AT4G14920 46.442 0.0 685.0
Chna7g00943 . 226 685 PHD Transcription Factor family AT4G30200 37.844 5.75e-91 286.0
Chna5g02297 . 320 404 PHD Transcription Factor family AT5G22260 40.0 2.25e-06 49.7
Chna3g02512 . 81 663 PHD Transcription Factor family AT5G22260 31.006 1.01e-83 277.0
Chna6g00460 . 540 963 PHD Transcription Factor family AT5G58610 37.5 1.37e-87 293.0
Chna4g01357 ACH 684 760 PHD Transcription Factor family AT4G14920 35.366 1.55e-07 54.3
Chna3g02826 . 498 925 PHD Transcription Factor family AT1G05380 32.874 2.52e-74 251.0
Chna9g01948 ACH 41 831 PHD Transcription Factor family AT3G53680 52.174 0.0 790.0
Chna4g02502 . 1 504 PHD Transcription Factor family AT2G18880 35.514 9.46e-90 284.0
Chna2g02570 . 3 317 PHD Transcription Factor family AT4G30200 52.681 3.98e-101 317.0
Chna8g01642 . 616 663 PHD Transcription Factor family AT2G36720 41.509 7.88e-06 48.5