AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00720 ATGACATCTCGCATCATCCTCCGTACACTCAAATCCAACCTCCACCGTCTCCGTCCACTCACATCCGTCGCCACCGTTAACCTCCGTCAAACCGCCGTTACGGCGAACAATGTTCGTGAATACTCGACACGTCAGAAGACGTCATCGTTGAACGACCCAAACCCTAACTGGTCAAACAGGCCGCCAAAAGAGACAATATTGTTAGATGGATGTGATTTTGAACATTGGCTTGTGGTTGTTGAGAAACCTGAAGGAGAGCCTACTAGAGATGAGATTATTGAGAATTATATTAATACTTTGGCTAAAGTTGTTGGAAGTTATGATGAAGCAAGGATGAAGACCTACTCGGTTTCAACAAGATGCTATTATGCTTTTGGAGCTCTTGTATCTGAAGAAGATTCTTACAAGCTTAAGGAATTACCTGGAGTTCGTTGGGTGCTCCCCGATTCTTATTTGGATGTTAAAAACAAGGATTACGGAGGTGAACCATTTATTGATGGAAAGGCTGTTCCATATGACCCAAAGTACCATGAAGAGTGGATCAGGAACAATGCTCGTGCCAATGAAAGAAACAGAAGGAATGACAGGCCTCGCAACTTTGACAGATCAAGAAATTTTGAGAGAAGAAGAGAGAACATGCAAACCAACCGTGGGTCCCCAGGAGGCCCACCACCTAGCAACATGGGAGGTCCACCGTCCAACATGAGTGGTCCGCCATCCAATATGGGAGGACCTCCACCCAACATGGGAGGACAACCACCTAACATGGGAGGAAGACCACAAGGTGGTAATATGGGTGGTCCGCCACCCAACAACTGGAATAATGGGCCACCACAACATTATGGCGGTGGGCCGCCACATATGGGAGGCGGGATGGCGCCTCAAAACAACATGGGCGGAGGAATGAGGCCTCAGAACATGGCTGGAGGGATGCCTAATAGTGCTGCTCCTAACTACCATCAGCAGGGTCAGTATGGGTCAAATAATGGAGGAATGCCATATCAATCTGGTCCTGGGCCCAACAGTTACCCTCCCAATGTAGGTGGTGGAAATCCCTACCAGAATCAGAATGTTCCTGGAAGAGACATGCCCCCATCCAACTATGAATGA 1110 47.93 MTSRIILRTLKSNLHRLRPLTSVATVNLRQTAVTANNVREYSTRQKTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVEKPEGEPTRDEIIENYINTLAKVVGSYDEARMKTYSVSTRCYYAFGALVSEEDSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQTNRGSPGGPPPSNMGGPPSNMSGPPSNMGGPPPNMGGQPPNMGGRPQGGNMGGPPPNNWNNGPPQHYGGGPPHMGGGMAPQNNMGGGMRPQNMAGGMPNSAAPNYHQQGQYGSNNGGMPYQSGPGPNSYPPNVGGGNPYQNQNVPGRDMPPSNYE 369
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00720 369 MobiDBLite consensus disorder prediction 311 336 - -
Chna2g00720 369 MobiDBLite consensus disorder prediction 188 369 - -
Chna2g00720 369 MobiDBLite consensus disorder prediction 41 61 - -
Chna2g00720 369 MobiDBLite consensus disorder prediction 188 214 - -
Chna2g00720 369 MobiDBLite consensus disorder prediction 347 362 - -
Chna2g00720 369 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 22 214 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Chna2g00720 369 MobiDBLite consensus disorder prediction 224 253 - -
Chna2g00720 369 Pfam Multiple organellar RNA editing factor 1, MORF domain 73 164 IPR054059 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00720 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58602 Chna2g00720 Chna7g03117
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:54815380 Chna3g03299 Chna-Chr3:241301368 dispersed
Chna Chna-Chr2:54815380 Chna7g03117 Chna-Chr7:274123646 wgd
Chna Chna-Chr2:54815380 Chna7g03185 Chna-Chr7:279820759 wgd