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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00729 ATGGCACAATTGCCGCCAAAAGTGCCAACAATGGCGCAAAATTGGCTCTCATATCCTTATAATCAAATGATGTCCATGCCATCTTCAGCTGCTCAGCCGCCGAATTGGGTTGATGAGTTTCTTGATTTTTCTTCTGTGAGGAGGAATTCGCATAGAAGATCTGTGAGCGATCCTATCGCGTTTGTGGAGTCTCCTTTTATTGAAGAATGCGGTAATACTAATCGGAATTGTGGTAATAATAGTGTTGGATTTGAACGGTTGGATGATGAGCAATTTAGTTCCATGTTTGCTGATGACGTTGGGACGAATGTGCCTACCTCGACCAGATCTTCGTCGAATCCTTCTACGCCTTCGGATCAAAATAGTGATAATGATGAGGGGAAGGTTACATTGCCACTAGACCAACACAAGCACCAACAAGAGCAGCAGCAGGAGCAACAACAACAACAACAACAGCCAAAGAACGAGCCTGGTGAGGTAGAAGATGGGAGTGGTTGTCAAACTGAGATGGATTCAGCTAAACCATGCTTTAATTTCTCGAGCGATGGTAGCACCATTGTTGATCCAAAGAGAGTGAAAAGGATTTTGGCAAATCGTCAATCTGCTCAGAGATCACGAGTGAGAAAGTTGCAATACATTTCTGAACTCGAACGTAGTGTTACTACATTACAGACCGAAGTGTCCGCATTGTCACCACGGGTAGCGTTTTTGGACCACCAAAGATTGGTTCTAAATGTTGATAACAGCGCACTCAAGCAACGAATTGCAGCTTTGGCTCAAGACAAGATTTTCAAAGATGCGCATCAAGAAGCATTAAAGAAAGAGATCGAGAGGTTACGAAAAGTGTATCAAGAACAAAACATGCAAAAGGCCGAGAACAACAACGACAACAACAACAACAACGACAATGACGCCACGGCCACCGGTGAAAACAAGGATAGCTCCATGAATGGTTCGGAGGGAGGTGAAAGGTTGTGCTAA 981 44.04 MAQLPPKVPTMAQNWLSYPYNQMMSMPSSAAQPPNWVDEFLDFSSVRRNSHRRSVSDPIAFVESPFIEECGNTNRNCGNNSVGFERLDDEQFSSMFADDVGTNVPTSTRSSSNPSTPSDQNSDNDEGKVTLPLDQHKHQQEQQQEQQQQQQQPKNEPGEVEDGSGCQTEMDSAKPCFNFSSDGSTIVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLVLNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRKVYQEQNMQKAENNNDNNNNNDNDATATGENKDSSMNGSEGGERLC 326
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00729 326 Coils Coil 265 301 - -
Chna2g00729 326 CDD bZIP-plant-RF2 191 241 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 SUPERFAMILY Leucine zipper domain 190 244 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 MobiDBLite consensus disorder prediction 142 157 - -
Chna2g00729 326 Pfam bZIP transcription factor 190 235 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 MobiDBLite consensus disorder prediction 98 183 - -
Chna2g00729 326 Gene3D - 189 296 - -
Chna2g00729 326 MobiDBLite consensus disorder prediction 290 318 - -
Chna2g00729 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 FunFam Basic leucine zipper 61 189 262 - -
Chna2g00729 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 SMART brlzneu 186 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Chna2g00729 326 MobiDBLite consensus disorder prediction 290 326 - -
Chna2g00729 326 PANTHER BASIC LEUCINE ZIPPER 34 1 307 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Chna2g00729 326 MobiDBLite consensus disorder prediction 98 128 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00729 K20557 transcription factor VIP1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:55557316 Chna7g01659 Chna-Chr7:108705240 dispersed
Chna Chna-Chr2:55557316 Chna8g01653 Chna-Chr8:143215124 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna6g00606 . 1 481 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 60.728 0.0 588.0
Chna2g01301 . 106 313 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G44080 42.723 4.28e-38 132.0
Chna9g00524 . 1 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 54.278 2.40e-106 313.0
Chna6g01065 . 1 553 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 55.63 1.78e-176 508.0
Chna4g02251 . 62 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 41.667 9.51e-36 127.0
Chna2g01095 . 1 243 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 46.304 2.26e-61 193.0
Chna5g01657 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 2.06e-23 97.8
Chna5g01297 . 1 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 43.294 1.40e-82 255.0
Chna2g00729 . 1 308 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 57.009 6.69e-102 301.0
Chna8g00781 ACH 52 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 68.103 2.58e-47 150.0
Chna00039756g00001 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.941 2.52e-93 277.0
Chna3g00014 . 38 333 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G06070 50.814 3.83e-88 268.0
Chna3g01689 . 112 215 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 41.346 1.02e-12 65.9
Chna1g00911 . 95 179 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 54.118 4.56e-22 86.3
Chna00040149g00014 . 114 239 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.531 4.35e-11 58.2
Chna5g00785 . 114 239 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.531 1.93e-09 53.5
Chna6g03401 . 5 155 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 40.625 4.02e-24 91.3
Chna7g03157 . 49 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G49760 50.0 5.38e-21 82.4
Chna4g01435 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 55.325 1.29e-108 318.0
Chna6g03278 ACH 11 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 49.102 8.50e-40 130.0
Chna00038254g00018 . 9 170 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 48.256 6.78e-46 148.0
Chna8g03142 . 1 372 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 56.397 3.61e-131 380.0
Chna00038639g00004 . 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 65.517 6.06e-43 140.0
Chna4g03485 . 206 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 50.0 1.85e-15 70.1
Chna8g00217 . 340 397 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 65.517 3.29e-18 79.0
Chna5g00791 . 118 239 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 25.175 7.33e-10 54.7
Chna3g01514 . 21 144 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G62420 36.29 6.03e-19 75.9
Chna00039015g00058 . 21 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 54.887 2.51e-141 412.0
Chna9g03182 . 147 469 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G19490 35.328 2.17e-36 137.0
Chna7g01835 . 114 239 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.531 4.35e-11 58.2
Chna7g02319 . 1 200 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 52.0 2.28e-67 212.0
Chna00038359g00011 . 202 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.495 2.16e-22 94.0
Chna6g04711 . 276 443 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G08320 28.729 1.32e-17 79.0
Chna3g03489 . 1 388 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G35530 59.391 1.14e-144 415.0
Chna8g01084 . 25 158 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 50.37 4.97e-34 115.0
Chna7g01659 . 1 306 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 51.672 2.49e-94 280.0
Chna8g00637 ACH 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.441 1.13e-106 316.0
Chna1g01042 ACH 4 346 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 46.667 5.94e-79 244.0
Chna00039044g00037 . 22 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 34.715 6.87e-27 99.8
Chna5g00786 . 114 316 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 23.377 5.09e-09 54.3
Chna2g00264 ACH 19 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.651 7.11e-38 125.0
Chna00038907g00001 . 53 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 65.517 6.06e-43 140.0
Chna4g02334 . 24 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G28770 42.893 1.93e-71 226.0
Chna2g03915 ACH 1 381 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 50.36 3.52e-110 326.0
Chna7g01671 . 1 391 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G49720 39.381 8.67e-65 210.0
Chna3g02046 ACH 1 326 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G46270 34.635 9.72e-47 161.0
Chna8g00287 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 74.242 1.16e-175 488.0
Chna4g01995 ACH 29 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 60.432 1.11e-49 157.0
Chna7g02235 . 146 720 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40950 49.495 1.61e-146 439.0
Chna6g04833 . 16 337 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G43700 37.243 4.41e-45 154.0
Chna2g01424 ACH 211 300 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 53.333 3.62e-23 97.1
Chna8g01083 . 23 167 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G30530 52.703 1.14e-40 133.0
Chna1g01777 . 1 271 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 47.231 1.61e-69 217.0
Chna5g03767 ACH 16 171 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 47.59 5.99e-38 126.0
Chna4g01294 ACH 11 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.0 4.59e-115 340.0
Chna4g02865 . 26 367 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G40620 46.264 3.32e-74 229.0
Chna9g03413 . 217 285 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35900 52.174 6.14e-15 68.6
Chna2g01073 . 1 240 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G16770 46.063 8.23e-61 189.0
Chna5g04007 ACH 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.941 2.52e-93 277.0
Chna9g02195 . 213 293 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G58120 49.383 6.18e-18 80.9
Chna00001616g00026 . 22 214 Basic region leucine zipper (bZIP) Transcription Factor gene family AT2G22850 34.021 2.58e-26 99.0
Chna2g02354 . 9 170 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 48.256 6.78e-46 148.0
Chna9g03136 . 1 330 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G12250 70.655 4.27e-173 482.0
Chna7g02939 ACH 5 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 50.898 1.24e-49 156.0
Chna00038675g00062 . 23 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06839 57.623 1.83e-171 489.0
Chna5g00875 . 118 202 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06950 27.907 3.43e-08 48.1
Chna6g04728 . 109 320 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 27.442 5.13e-18 79.3
Chna8g02336 . 218 296 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 50.633 7.39e-17 71.6
Chna5g03649 . 25 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.781 5.72e-60 181.0
Chna3g04260 . 112 215 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 41.346 1.08e-12 65.5
Chna6g00955 . 1 228 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G35040 64.831 1.85e-104 302.0
Chna00038655g00003 . 1 302 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G36730 54.441 5.59e-107 316.0
Chna00001605g00025 . 11 416 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 52.0 4.59e-115 340.0
Chna5g02777 . 25 152 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G11260 75.781 5.72e-60 181.0
Chna8g01193 . 13 452 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G68640 58.952 6.83e-160 458.0
Chna4g03723 . 99 270 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G03970 50.549 1.80e-39 135.0
Chna5g03953 ACH 21 392 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G45249 55.303 4.98e-109 329.0
Chna00038197g00041 . 12 297 Basic region leucine zipper (bZIP) Transcription Factor gene family AT3G56850 52.941 2.52e-93 277.0
Chna5g01192 . 37 120 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 42.857 4.76e-13 59.7
Chna3g03625 . 34 277 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G24800 51.331 2.72e-74 229.0
Chna8g01653 . 46 517 Basic region leucine zipper (bZIP) Transcription Factor gene family AT4G38900 50.407 2.40e-122 366.0
Chna8g00174 . 104 317 Basic region leucine zipper (bZIP) Transcription Factor gene family AT5G06960 26.908 1.58e-17 79.7
Chna5g01197 ACH 19 164 Basic region leucine zipper (bZIP) Transcription Factor gene family AT1G75390 46.0 4.08e-37 123.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chna bZIP_1 2.4e-09 CL0018 TF bZIP