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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00745 TTGTTTTGTTGTTCTTGTAATGCTTATAATTTCAATGTTGGTGGAAAAAACGGATGGACTATACCCCCATCGGAAAGCTATAATCAATGGGCTGGCAGGTTGAGGTTTAATGTCAATGACACTCTACATTTCAAGTACAATGGTGGTTCAGATTCTGTAATGGTGGTTAACAATGGTGATTATGACAACTGCAATACAAACAACCCAATCACCACCCTCACAGGCGGCGACTCTTACTATAACTTAAACCATTCAGGACCTTTCTACTTCATTAGTGGTAACAAATCCAACTGTGATAAAGGTCAGAAGCTCATTGTGGTTGTTATATCACCTAAAAAGATAGCAACACCTCCGGCGGGTTCTTCACCTGTACCGGCGATGTCTCCGGCTTATTCACCGGAATCTGGGATAGTAATGCCGGGTAGTCCGGTGGGTTCGCCCGGTGAGGGGGTTGCTTCTTCTCCAACTATGAATCCGGCCGATGCAAATGCTCCAGCGGCCGCCAGAGGGACGTCATCGGCTGCGAGACTGCCCATTTCTGTTATGTTAAGTGTTACTCTTGTTATGATGTCAATTGGGTTAGGCAGGTTAAATTAA 597 44.89 LFCCSCNAYNFNVGGKNGWTIPPSESYNQWAGRLRFNVNDTLHFKYNGGSDSVMVVNNGDYDNCNTNNPITTLTGGDSYYNLNHSGPFYFISGNKSNCDKGQKLIVVVISPKKIATPPAGSSPVPAMSPAYSPESGIVMPGSPVGSPGEGVASSPTMNPADANAPAAARGTSSAARLPISVMLSVTLVMMSIGLGRLN 198
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00745 198 Gene3D - 7 113 IPR008972 -
Chna2g00745 198 Pfam Plastocyanin-like domain 19 102 IPR003245 GO:0009055(InterPro)
Chna2g00745 198 ProSiteProfiles Phytocyanin domain profile. 9 110 IPR003245 GO:0009055(InterPro)
Chna2g00745 198 MobiDBLite consensus disorder prediction 142 167 - -
Chna2g00745 198 PANTHER BLUE COPPER PROTEIN 11 128 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Chna2g00745 198 CDD OsENODL1-like 9 109 IPR041846 -
Chna2g00745 198 SUPERFAMILY Cupredoxins 8 109 IPR008972 -
Chna2g00745 198 FunFam Early nodulin-like protein 1 8 113 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00745 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58619 Chna2g00745 Chna5g00668
58620 Chna2g00745 Chna5g00725
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:57237905 Chna5g00725 Chna-Chr5:36024355 wgd
Chna Chna-Chr2:57237905 Chna5g00668 Chna-Chr5:33924671 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna5g00725 ACH 4 346 PhytocyaNIN gene family AT4G27520 37.596 1.87e-54 181.0
Chna7g03399 ACH 14 150 PhytocyaNIN gene family AT1G79800 40.0 4.44e-34 118.0
Chna7g00540 . 33 158 PhytocyaNIN gene family AT2G25060 40.909 3.85e-27 99.0
Chna6g04592 . 6 131 PhytocyaNIN gene family AT3G20570 34.375 9.20e-18 78.6
Chna4g02068 . 3 135 PhytocyaNIN gene family AT2G27035 42.446 1.09e-36 122.0
Chna3g03140 . 1 160 PhytocyaNIN gene family AT1G64640 50.0 3.93e-48 154.0
Chna1g01147 . 12 179 PhytocyaNIN gene family AT1G08500 38.824 9.99e-36 123.0
Chna9g00181 . 42 173 PhytocyaNIN gene family AT4G31840 35.075 8.39e-20 80.5
Chna5g04247 . 5 152 PhytocyaNIN gene family AT5G15350 39.333 9.83e-39 129.0
Chna7g03748 . 18 138 PhytocyaNIN gene family AT5G57920 46.281 4.37e-35 120.0
Chna6g00007 . 6 131 PhytocyaNIN gene family AT3G20570 33.594 7.07e-17 76.3
Chna5g00543 ACH 9 186 PhytocyaNIN gene family AT3G20570 44.974 1.29e-45 148.0
Chna4g02067 . 2 168 PhytocyaNIN gene family AT5G15350 48.503 1.34e-56 174.0
Chna5g00668 ACH 4 329 PhytocyaNIN gene family AT4G27520 41.791 1.22e-58 192.0
Chna00039427g00054 . 41 136 PhytocyaNIN gene family AT1G17800 40.625 8.02e-21 80.1
Chna5g04321 . 5 152 PhytocyaNIN gene family AT5G15350 39.333 9.21e-39 129.0
Chna4g00118 . 14 180 PhytocyaNIN gene family AT2G25060 33.14 1.23e-22 87.4
Chna2g01326 . 15 137 PhytocyaNIN gene family AT1G17800 37.903 1.69e-15 66.2
Chna2g00845 ACH 14 188 PhytocyaNIN gene family AT3G20570 42.857 7.70e-47 150.0
Chna9g03034 . 10 201 PhytocyaNIN gene family AT1G08500 57.812 6.31e-71 214.0
Chna4g00414 ACH 9 146 PhytocyaNIN gene family AT1G79800 44.203 2.25e-37 126.0
Chna2g00745 ACH 21 180 PhytocyaNIN gene family AT5G53870 46.584 2.53e-43 147.0
Chna4g00359 . 9 146 PhytocyaNIN gene family AT1G79800 44.203 1.41e-38 129.0
Chna6g03800 ACH 7 133 PhytocyaNIN gene family AT3G20570 47.244 2.60e-42 139.0
Chna6g04779 . 16 167 PhytocyaNIN gene family AT2G25060 26.582 6.94e-07 46.6
Chna4g00848 . 5 127 PhytocyaNIN gene family AT3G18590 50.407 5.56e-40 132.0