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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00746 ATGGCTAAACACCTCTGGCTTATTGCCGCTATCTTCGCAATCACCGTTCCTTGTTTGTCAACATCAATGTCTATGTTATTTCCATCACAAACCCAATGGACCATGCTAGGTCGCTCACCTGGCATCTCTCGCCAACTCGTGGGCGATACAATTGACATGAGGGAGGAAATGATGATGGAATCCGAAAGTGCACGAAGAGTTCTAGCAGGAAGGGGCTATATAAGTTATGATGCAATGCAAAAGAATAATGTACCGTGCAACCAACGTGGAAAATCGTATTACGATTGTAATAGCAGAGGTCAAGCTAACCCGTATTCACGAGGTTGTAACGTTATCACGAGGTGTGGTGGTAGATAA 357 44.54 MAKHLWLIAAIFAITVPCLSTSMSMLFPSQTQWTMLGRSPGISRQLVGDTIDMREEMMMESESARRVLAGRGYISYDAMQKNNVPCNQRGKSYYDCNSRGQANPYSRGCNVITRCGGR 118
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00746 118 Pfam Rapid ALkalinization Factor (RALF) 55 116 IPR008801 -
Chna2g00746 118 PANTHER RAPID ALKALINIZATION FACTOR-LIKE 7 115 - GO:0009506(PANTHER)|GO:0019722(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00746 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58621 Chna2g00746 Chna5g00667
58622 Chna2g00746 Chna5g00720
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:57241662 Chna2g03559 Chna-Chr2:367323262 dispersed
Chna Chna-Chr2:57241662 Chna5g00720 Chna-Chr5:35831496 wgd
Chna Chna-Chr2:57241662 Chna5g00667 Chna-Chr5:33920768 wgd