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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00747 ATGACAACACACGGAGTGAAGAAGATGGCATTAACATCACAAGCATACTTAGACGGATCATCAGTGAAACAAACGAAATCATTAATAACAGAGCTATGTCGTTTGTTTTACAACTTAGGTTGGGTTGGTGGTACCGGTGGAAGTATCACTGCTAAAGTGCACGATGATTCTGTTCCTAAGTCTGATCAGCTTATTATCATGTCTCCTTCTGGTGTGCAAAAGGAAAGAATGGTTGAAGAAGATATGTATGTGTTATCTTCAACTGGAGATATTTTGTTTACGCCATCACCGAAACCTTATCCTCATAAACCTCCAAAGTGTTCAGACTGTGCCTCTCTTTTCATGAAGGCTTATAATATGCGTAATGCTGGTGCAGTCATTCATAGTCATGGAATGGAATCTTGTATTGTTACAATGCTTGATCCTTTGGCAAAAGAGTTTAGGATCACTCATATGGAGATGATTAAAGGGATTCAAGGGCATGGCTATTATGACGAGCTTGTGGTTCCCATAATAGAAAACACTGCTCATGAGAGAGAGTTGACTGAATATCTTGCTGCAGCGATTGAAGCGTACCCAAAAACAACTGCTGTACTGGTCCGAAATCATGGTATCTATGTATGGGGCGATACCTGGATTAGTGCCAAAACTCAGCGCTGTATTGTTCTGGATATTGAAGGGACAACTACTCCTATATCATTTGTCACCGATGTTCTTTTCCCGTATGCCTGTAAAAATGTTCAAAGGCATTTGGAAGCAACATACGATACTGATGCTACTCAAGATGATATTAAGTTGTTGCGCTCTCAAGTACAAGATGATTTACAAAACGGAGTTGCGGATGCTGTTCCTATCCCATCTGATGAGGCGGGAAAAGAGAAGGTGATAGCTGCTTTGGTCGCTAATGTTGAAGGAATGATAAAATCTGACAGGAAAATTACTTCCTTAAAACAGTTACAAGGTCACATATGGCAAACTGGATTTGAGCAAAATGAACTGAAAGGTGTGGTTTTTGATGATGTTCCTAGCGCTCTTGAAAAGTGGCATGCTTCTGGTATAAAGGTGTATATATATTCTAGTGGTAGCAGATTAGCACAGAGGCTGTTATTTGGATATACCAATTACGGGGACTTGAGAAACTACTTGTGCGGGTTTTTTGACACCACAGTGGGGAACAAGAAAGAAACAAAGAGTTATGTTGAAATATCGGAATCACTTGGAGTTCATAAGCCATCTGAAGTCCTGTTTGTAACGGATATCTATCAAGAAGCTGTAGCTGCAAAGGCAGCTGGCTTGGAGGTGACGATCTCTGTTCGGCCCGGAAATGGACCACTTCCCAAGAATCACGGTTTCAAGACAATCAAGTCTTTTTCGGAGATATGA 1383 40.85 MTTHGVKKMALTSQAYLDGSSVKQTKSLITELCRLFYNLGWVGGTGGSITAKVHDDSVPKSDQLIIMSPSGVQKERMVEEDMYVLSSTGDILFTPSPKPYPHKPPKCSDCASLFMKAYNMRNAGAVIHSHGMESCIVTMLDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAHERELTEYLAAAIEAYPKTTAVLVRNHGIYVWGDTWISAKTQRCIVLDIEGTTTPISFVTDVLFPYACKNVQRHLEATYDTDATQDDIKLLRSQVQDDLQNGVADAVPIPSDEAGKEKVIAALVANVEGMIKSDRKITSLKQLQGHIWQTGFEQNELKGVVFDDVPSALEKWHASGIKVYIYSSGSRLAQRLLFGYTNYGDLRNYLCGFFDTTVGNKKETKSYVEISESLGVHKPSEVLFVTDIYQEAVAAKAAGLEVTISVRPGNGPLPKNHGFKTIKSFSEI 460
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00747 460 Gene3D - 22 226 IPR036409 -
Chna2g00747 460 Gene3D - 328 460 IPR023214 -
Chna2g00747 460 SUPERFAMILY AraD-HMP-PK domain-like 23 218 IPR036409 -
Chna2g00747 460 Gene3D - 232 327 - -
Chna2g00747 460 PANTHER ENOLASE-PHOSPHATASE E1 214 460 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Chna2g00747 460 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 22 225 - -
Chna2g00747 460 Pfam haloacid dehalogenase-like hydrolase 219 431 - -
Chna2g00747 460 Pfam Class II Aldolase and Adducin N-terminal domain 29 217 IPR001303 -
Chna2g00747 460 NCBIfam acireductone synthase 219 459 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Chna2g00747 460 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 14 460 IPR027505 -
Chna2g00747 460 SMART Aldolase-II-2 27 222 IPR001303 -
Chna2g00747 460 SUPERFAMILY HAD-like 218 460 IPR036412 -
Chna2g00747 460 CDD HAD-EP 220 441 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Chna2g00747 460 SFLD enolase-phosphatase 219 459 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Chna2g00747 460 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 232 328 - -
Chna2g00747 460 NCBIfam methylthioribulose 1-phosphate dehydratase 29 218 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Chna2g00747 460 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 219 459 - -
Chna2g00747 460 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 328 460 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00747 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Chna2g00747 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Chna2g00747 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
58623 Chna2g00747 Chna5g00665
58624 Chna2g00747 Chna5g00713
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:57276693 Chna5g00713 Chna-Chr5:35393631 wgd
Chna Chna-Chr2:57276693 Chna5g00665 Chna-Chr5:33841061 wgd