AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00748 ATGGAACCCCAAGAAAACCACCACCCATCTCCAGCCAACTCACCATCATCCAACTGCAGCACCACCATACAAACACCACCATTAACACCACGACCCATCCAAAGATCCGACCCAAATCCATACCCTACCACCTTTGTTCAAGCTGACACTTCTTCATTCAAACAAGTTGTCCAAATGCTAACTGGTTCATCCCAACAAGATTCATCATCAAATGGGTCAAACGGGTCCAACCCATCAAAGGTATCAATCCCACCTGTGAAAAAACAAAGCTTCAAGCTATATGAACGTAGGAACAGTTTGAACTTAAAAAACGGGTTGATGATAAACCCAATGGGTCCAAGATTCGGGTCAAGTTCATCATCTCCAAGGGTTCAAGAGCTTTTGTCACCAAGTATACTTGATTTTCCATCGTTGGTGTTAAGTCCTGTAACACCATTAGTTGAAGATCCATTTGATAAAAAAGAAGAAGAAAGGGTTATTAAGGAAAAAGGGTTTTATTTACATCCGTCACCCAGAGCAGTAGCAACAGCACGTGGCTCTGCTGAGCCACGCTTGTTGCCACTTTTCCCGTTGACGTCCCCGAGATCATCGCTGAGTTAG 600 44.0 MEPQENHHPSPANSPSSNCSTTIQTPPLTPRPIQRSDPNPYPTTFVQADTSSFKQVVQMLTGSSQQDSSSNGSNGSNPSKVSIPPVKKQSFKLYERRNSLNLKNGLMINPMGPRFGSSSSSPRVQELLSPSILDFPSLVLSPVTPLVEDPFDKKEEERVIKEKGFYLHPSPRAVATARGSAEPRLLPLFPLTSPRSSLS 199
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00748 199 PANTHER VQ MOTIF-CONTAINING PROTEIN 11-LIKE 18 197 IPR039611 -
Chna2g00748 199 MobiDBLite consensus disorder prediction 1 90 - -
Chna2g00748 199 Pfam VQ motif 40 66 IPR008889 -
Chna2g00748 199 MobiDBLite consensus disorder prediction 38 84 - -
Chna2g00748 199 MobiDBLite consensus disorder prediction 7 30 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00748 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
58625 Chna2g00748 Chna5g00664
58626 Chna2g00748 Chna5g00712
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:57288866 Chna2g04433 Chna-Chr2:418077230 dispersed
Chna Chna-Chr2:57288866 Chna5g00712 Chna-Chr5:35354423 wgd
Chna Chna-Chr2:57288866 Chna5g00664 Chna-Chr5:33799233 wgd