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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00756 ATGATCATATCCAATCTAATCTTTTCTCCAACAAACTCAAAAACAAACAAACAAAAACACACATTTTACATGGCTGGCACCTTAACAACCGGATTTCCAACGGCTTCCTTAACTCCTCCGGTCTCTATTCGCCGGAACTTTATCTCGACCTCTTCAAAACTAAACATCAGGTCATTCAGATCATATGGATCGGTTAATTTAAGGTCCAGATTCAACCGAATTGTGTGTGAAGCTCAGGAGGCAACATCTGTTCAAGTACTTCCCGTGACTGATGGAACATGGCAATCTCTAGTCCTCGACTCTGCTCTTCCCGTACTGGTCGAATTCTGGGCTCCATGGTGTGGGCCATGTCGCGTGATCCACCCTGTGGTTGACGACCTCGCGAAAGAATACACTGGCAAGCTCACATGTTACAAGTTAAATACTGATGAGAGTCCCTCAATCGCAACCAAATATGGTATAAGAAGCATCCCGACCATCATGATCTTTAAAGACGGAGAAAAGAAAGACGCCGTCATTGGTGCAGTTCCACGATCAACTCTGTGTACCTCCATTGAAAAGTTCTTGTAG 570 44.39 MIISNLIFSPTNSKTNKQKHTFYMAGTLTTGFPTASLTPPVSIRRNFISTSSKLNIRSFRSYGSVNLRSRFNRIVCEAQEATSVQVLPVTDGTWQSLVLDSALPVLVEFWAPWCGPCRVIHPVVDDLAKEYTGKLTCYKLNTDESPSIATKYGIRSIPTIMIFKDGEKKDAVIGAVPRSTLCTSIEKFL 189
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00756 189 CDD TRX-family 93 181 - -
Chna2g00756 189 Gene3D Glutaredoxin 85 189 - -
Chna2g00756 189 PRINTS Thioredoxin family signature 153 164 - -
Chna2g00756 189 PRINTS Thioredoxin family signature 105 113 - -
Chna2g00756 189 PRINTS Thioredoxin family signature 113 122 - -
Chna2g00756 189 ProSiteProfiles Thioredoxin domain profile. 75 189 IPR013766 -
Chna2g00756 189 PANTHER GEO12009P1 64 189 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
Chna2g00756 189 FunFam Thioredoxin 79 189 - -
Chna2g00756 189 ProSitePatterns Thioredoxin family active site. 106 124 IPR017937 -
Chna2g00756 189 Pfam Thioredoxin 86 186 IPR013766 -
Chna2g00756 189 NCBIfam thioredoxin 90 188 IPR005746 GO:0015035(InterPro)
Chna2g00756 189 SUPERFAMILY Thioredoxin-like 81 188 IPR036249 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00756 K03671 thioredoxin
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Event-related genes

Select Gene_1 Gene_2 Event_name
58631 Chna2g00756 Chna5g00644
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:2518244 Chna2g00756 Chna-Chr2:57544822 dispersed
Chna Chna-Chr2:57544822 Chna7g02833 Chna-Chr7:251795877 dispersed
Chna Chna-Chr2:57544822 Chna5g00688 Chna-Chr5:34621681 wgd
Chna Chna-Chr2:57544822 Chna5g00644 Chna-Chr5:32915036 wgd