AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00762 ATGGGTAAAAAACGAAAGCACGCAGAAGTGGAAGCAGTGCCGGAGAAGAAAGACAACGTGGCACCGGAGAGACCACCTAGGACACTTTTTGGTTGGAAAAACAAACCAACTGAAAATGATCAACAAACTTTTAGGAATAAAGAGAAAGTGCTTGTTACTTGCTCTCGTAGGATCAATTACAGGTATCGACATTTGATGTTGAATTTGGTGTCGATTTTACCTCATTGCAAGAAAGATAACAAAGTTGAGTCTAAAGCTACCAAAGGTGCAACTCTGAATGAGCTTGTTGAACTCAAGAATTGTTCTTCATGTCTCTTTTTTGAGTGTAGGAAACACAAGGACCTTTACTTGTGGATGTCAAAGTGCCCAAATGGTCCATCTGTGAAGTTTTTGGTGAATGCAGTTCACACAATGGAAGAGTTAAAGCTCACTGGGAATCATCTTAAAGGCGCACGCCCTCTTCTTACTTTTTCATCAAATTTTGATAAAGACCCACACTGGAAACTTCTCAAGGAGATGATTACTCAGGGACTGGTTGTGGATTTGAAGGTGAGGGTGGCTTTGGATGAGTATCCAGAAATATTTGGAACTCCAAAGGAGCACAGGAAATCAAAGCCCTATTATGACCATGTATTTGTGTTCTCTATCGTTGATGACCACATATGGTTCCGTAATTACCAGATATCGTGTCCACATACTGGAGATGATAAAATCGATCGAGGGGGCCTTGACAAGATGACCCTTATTGAGGTTGGTCCAAGGTTTTGTTTAAATCCAATCAAGATATTTGGTGGTAGCTTTGGCGGTCCAACTCTATATGAGAATCCGTTCTACGTTTCACCAAATCAGATACGGTCATTGGAGAAGAGAAAGAAGGCTGGTAAGTATGCAAACAAGGTTAAAGCCAAGACAAAAAGAAACATGCATACGATGGAAAACCAATTGGTATCTGATGAAATCGAAGGCTTGTGGAAGGCATAA 981 40.77 MGKKRKHAEVEAVPEKKDNVAPERPPRTLFGWKNKPTENDQQTFRNKEKVLVTCSRRINYRYRHLMLNLVSILPHCKKDNKVESKATKGATLNELVELKNCSSCLFFECRKHKDLYLWMSKCPNGPSVKFLVNAVHTMEELKLTGNHLKGARPLLTFSSNFDKDPHWKLLKEMITQGLVVDLKVRVALDEYPEIFGTPKEHRKSKPYYDHVFVFSIVDDHIWFRNYQISCPHTGDDKIDRGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRSLEKRKKAGKYANKVKAKTKRNMHTMENQLVSDEIEGLWKA 326
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00762 326 SMART Brix-2 51 262 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Chna2g00762 326 SUPERFAMILY Class II aaRS ABD-related 49 265 - -
Chna2g00762 326 MobiDBLite consensus disorder prediction 1 23 - -
Chna2g00762 326 MobiDBLite consensus disorder prediction 1 41 - -
Chna2g00762 326 Pfam Brix domain 55 261 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Chna2g00762 326 ProSiteProfiles Brix domain profile. 48 268 IPR007109 GO:0006364(InterPro)|GO:0019843(InterPro)
Chna2g00762 326 PANTHER RIBOSOME BIOGENESIS PROTEIN BRIX 2 325 IPR026532 GO:0000027(PANTHER)|GO:0003723(PANTHER)|GO:0005730(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00762 K14820 ribosome biogenesis protein BRX1