AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00790 ATGGCTGCCTTCACATTTTCACCCAAAACTCATTCTCACTCTTGCGGTTGTGCTAGTAACAATGAAGTGGTATTGTTGTCAAAGACAAAAGGGTTAAGAACAAATTCAGTTAGATATGAAATGAAGGTCACGTGCCAGGCAGCAGCAGCTGTTGCTGACGTGGAAAAGAGGAAGTTAATGAAGATGTTGTTGTTTGGTGCTGTTGTTGGTTTACCTGCTGCTGCTGGTTTGTTGGTTCCTTATTCCGACTCTTTTGCTACACCTGGTTCAGGCAGTTCCAAAGGTGGCACTGTCGCCAAAGATGAGTTTAGTAATGATATCATTGCATCAGAATGGCTAAAGACCCACGGACCTGGTGAAAGAACTCTTGCTCAAGGCTTAAAGGGACATCCTACGTACCTTATGGTCGAGAACAACAGAACGTTTGCAACATATGGGATTAATGTGGTATGCACCCATTTAGGGTGTATCGTGCCATGGAACACGGTGGAGAAGAAGTTTGTATGCCCCTGCCATGGTTCTCAGTTTGATAATCATGGCAAAGTTGTCAAGGGTCCTGCTCCTCAGTCTTTGGAACTGGCTCGTGTGGATATAGATGATGGCAAAGTGGTGTTTGCTCCATGGAGGGAAACCGATTTTAGAACAGGCGATGCTCCATGGTGGTCTTAA 669 45.14 MAAFTFSPKTHSHSCGCASNNEVVLLSKTKGLRTNSVRYEMKVTCQAAAAVADVEKRKLMKMLLFGAVVGLPAAAGLLVPYSDSFATPGSGSSKGGTVAKDEFSNDIIASEWLKTHGPGERTLAQGLKGHPTYLMVENNRTFATYGINVVCTHLGCIVPWNTVEKKFVCPCHGSQFDNHGKVVKGPAPQSLELARVDIDDGKVVFAPWRETDFRTGDAPWWS 222
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00790 222 Pfam Rieske [2Fe-2S] domain 131 191 IPR017941 GO:0051537(InterPro)
Chna2g00790 222 CDD Rieske-cytochrome-b6f 97 222 - -
Chna2g00790 222 PRINTS Rieske 2Fe-2S subunit signature 179 191 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna2g00790 222 PRINTS Rieske 2Fe-2S subunit signature 167 179 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna2g00790 222 PRINTS Rieske 2Fe-2S subunit signature 146 157 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Chna2g00790 222 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 41 209 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
Chna2g00790 222 Gene3D Single helix bin 43 87 - -
Chna2g00790 222 Gene3D - 88 222 IPR036922 GO:0051537(InterPro)
Chna2g00790 222 FunFam Cytochrome b6-f complex iron-sulfur subunit 88 222 - -
Chna2g00790 222 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 112 205 IPR017941 GO:0051537(InterPro)
Chna2g00790 222 SUPERFAMILY ISP domain 104 221 IPR036922 GO:0051537(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00790 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
58639 Chna2g00790 Chna5g00583
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:59998706 Chna5g00583 Chna-Chr5:29449865 wgd