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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00816 ATGGGCTCAGAACAATATTCTAGTTATAGAGCAACTGGTCAACCCTCATCTTACTCATCTCCAAAACCACAAATCCCTTTATTTCCCACAAGACGAATTGAATCCTTAAAGTTTGAATCAAGAGACTCACCCAATTCTCCCTTCGTAAATCCGTTTGATTCAGAGATATTCACCACAAATAGCGATAGTCGAGAAAAATACAGCTCAACCTCAGGTGCTAGCCCTTCTTCCCTCGAAGATTGTAGCTCTGTTAACCCTTCAAGCAGTGTTCATTACATGATCAATGCTCTTCAAGATATAGAGACCACTCTAATGGCCCCAGATGATGACGTATCCATGCCCATTAACCCTTCTTATGGTCAAAATCAGTGGCCACAACCGTCAAACCAAAGGCCTACACAGTGGACCCATGAACCCACCAGTTCAAACATGGTTCAGCCCCAAGTTCTACATACTAATAGTAATCTAAAACAGTTGCTTATTGCGTGTGCAAGTGCACTTGCTGGAAACAAGCTTGATGAGTTTAAGGTCCTGGTTGAACATGCACGAACTTTGGTGTCAATTAGTGGCGACCCAATACAGAGGCTAGGTGCTTATATGGTCGAAGGTTTGGTAGCTAGGCGGGAATTGTCTGGGACTCACATATATCGAGCCTTAAGGTGTCGGGAACCCGAAGGTAAAGACTTACTTTCCTACATGCAAATCTTATACGATATATGCCCGTATTTGAAGTTCGGGTACATGGCTGCAAACGGTGCAATAGCAGAAGCTTGCAGAAATGAAGATCGAATCCACATCATTGACTTCCAAATAGCTCAAGGGACACAATGGATGACACTTCTGCAGGCTCTTGCTGCTAGACCTGGGGGCCCACCTCACGTCCGTATCACGGGAATTGACGATCCAGTTTCGAAATATGCACGCGGCGATAGTTTGGAGTTAGTTGGAAAACGGTTAGAAATGGTTTCTAAAAAGTTTAATATCCCAATTGAGTTTCACCCGCTTCCGGTTTACGCACCACACGTGACAAAATCGATGCTTGATGTAAGACCAGGTGAGGCCTTAGCGGTGAATTTCCCGCTTCAACTTCATCACATGCCGGACGAAAGTGTTGACGTGAATAACCCACGAGATGAACGGTTAAGAATGGTTAAATCACTTTCACCAAAAGTTGTTACTTTAATCGAGCAAGAATCGAACACAAACACAGCTGCTTTCTTTCCCAGGTTCTTGGAAGCCCTTGACTATTACTCTGCAATGTTCGAGTCAATGGATGCAACTTCAACACGGGATAAAAAAGAACGAATAAACGTGGAACAACATTGCTTGGCTCGAGACATAGTCAACATCATAGCATGTGAAGGTAAAGAAAGAGTTGAAAGACACGAGCTTTTCAAGAAGTGGAGGTCAAGGTTAACAATGGCGGGGTTTAAACAGTATCCGTTAAGTGGGTATGTAAATTCGGTTATCAGGGATTTGCTAAAGTGCTACTCGAAGCATTATACATTGGTGGAAGAAGATGGAGCTATGCTGTTGGGTTGGAAAGAACGAAATCTTATATCAGCATCTGCTTGGCACTGA 1581 43.52 MGSEQYSSYRATGQPSSYSSPKPQIPLFPTRRIESLKFESRDSPNSPFVNPFDSEIFTTNSDSREKYSSTSGASPSSLEDCSSVNPSSSVHYMINALQDIETTLMAPDDDVSMPINPSYGQNQWPQPSNQRPTQWTHEPTSSNMVQPQVLHTNSNLKQLLIACASALAGNKLDEFKVLVEHARTLVSISGDPIQRLGAYMVEGLVARRELSGTHIYRALRCREPEGKDLLSYMQILYDICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGPPHVRITGIDDPVSKYARGDSLELVGKRLEMVSKKFNIPIEFHPLPVYAPHVTKSMLDVRPGEALAVNFPLQLHHMPDESVDVNNPRDERLRMVKSLSPKVVTLIEQESNTNTAAFFPRFLEALDYYSAMFESMDATSTRDKKERINVEQHCLARDIVNIIACEGKERVERHELFKKWRSRLTMAGFKQYPLSGYVNSVIRDLLKCYSKHYTLVEEDGAMLLGWKERNLISASAWH 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00816 526 MobiDBLite consensus disorder prediction 1 84 - -
Chna2g00816 526 MobiDBLite consensus disorder prediction 107 141 - -
Chna2g00816 526 MobiDBLite consensus disorder prediction 40 84 - -
Chna2g00816 526 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 134 525 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Chna2g00816 526 ProSiteProfiles GRAS family profile. 147 526 IPR005202 -
Chna2g00816 526 Pfam GRAS domain family 156 525 IPR005202 -
Chna2g00816 526 MobiDBLite consensus disorder prediction 115 141 - -
Chna2g00816 526 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00816 K27748 scarecrow-like transcription factor PAT
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1587768 Chna Chna2g00816 Chna-Chr2:62226223 Chna6g03720 Chna-Chr6:320024221
1621817 Chna Chna2g00816 Chna-Chr2:62226223 Chna7g03013 Chna-Chr7:265742602
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna5g02997 . 30 656 GRAS Transcription Factor family AT1G63100 51.962 0.0 552.0
Chna6g04130 . 179 444 GRAS Transcription Factor family AT1G55580 54.682 9.41e-98 292.0
Chna2g03676 . 24 94 GRAS Transcription Factor family AT1G66350 63.014 3.52e-26 99.8
Chna4g02455 . 171 544 GRAS Transcription Factor family AT3G03450 34.491 1.33e-57 198.0
Chna2g00816 . 73 489 GRAS Transcription Factor family AT5G48150 57.737 6.46e-175 500.0
Chna5g00093 . 40 444 GRAS Transcription Factor family AT1G55580 49.635 2.39e-123 362.0
Chna4g02601 . 119 507 GRAS Transcription Factor family AT1G66350 41.827 8.39e-99 311.0
Chna9g00237 ACH 154 640 GRAS Transcription Factor family AT5G52510 44.732 6.17e-114 350.0
Chna2g01198 . 155 597 GRAS Transcription Factor family AT1G50600 59.688 0.0 548.0
Chna8g03072 . 91 555 GRAS Transcription Factor family AT4G00150 40.657 2.93e-102 317.0
Chna5g00799 . 73 713 GRAS Transcription Factor family AT2G37650 52.055 0.0 635.0
Chna9g03023 . 4 482 GRAS Transcription Factor family AT1G50420 65.145 0.0 624.0
Chna5g02855 . 303 546 GRAS Transcription Factor family AT3G03450 31.984 9.10e-37 138.0
Chna6g02738 . 241 651 GRAS Transcription Factor family AT3G54220 80.769 0.0 665.0
Chna3g01936 . 37 271 GRAS Transcription Factor family AT1G50420 71.489 3.30e-122 355.0
Chna7g02901 . 150 504 GRAS Transcription Factor family AT1G66350 28.993 3.71e-49 176.0
Chna1g02392 . 28 530 GRAS Transcription Factor family AT1G14920 57.565 0.0 635.0
Chna1g00248 . 152 515 GRAS Transcription Factor family AT5G17490 24.74 3.94e-17 82.0
Chna3g00857 . 147 367 GRAS Transcription Factor family AT1G66350 27.074 4.95e-13 67.4
Chna9g01187 . 21 107 GRAS Transcription Factor family AT1G14920 58.621 2.47e-24 100.0
Chna6g01019 . 326 756 GRAS Transcription Factor family AT1G07530 48.724 3.88e-143 439.0
Chna00040566g00011 . 1 525 GRAS Transcription Factor family AT4G17230 51.878 0.0 540.0
Chna00038199g00003 . 73 714 GRAS Transcription Factor family AT2G37650 53.064 0.0 654.0
Chna4g03985 . 119 507 GRAS Transcription Factor family AT1G66350 41.827 8.39e-99 311.0
Chna00039494g00057 . 12 409 GRAS Transcription Factor family AT3G49950 61.259 0.0 519.0
Chna8g02985 . 205 555 GRAS Transcription Factor family AT4G00150 46.467 1.81e-100 313.0
Chna2g01776 . 53 714 GRAS Transcription Factor family AT2G37650 45.147 0.0 548.0
Chna2g02745 . 2 767 GRAS Transcription Factor family AT1G07530 45.596 0.0 604.0
Chna2g02733 . 22 767 GRAS Transcription Factor family AT1G07530 45.395 0.0 600.0
Chna00040095g00019 . 441 766 GRAS Transcription Factor family AT1G07530 62.195 4.15e-145 426.0
Chna9g00937 . 86 746 GRAS Transcription Factor family AT1G07530 43.891 1.40e-177 525.0
Chna1g01920 . 20 766 GRAS Transcription Factor family AT1G07530 46.859 0.0 604.0
Chna3g02313 ACH 204 555 GRAS Transcription Factor family AT4G00150 57.377 4.00e-141 420.0
Chna5g00479 . 180 258 GRAS Transcription Factor family AT4G36710 46.988 2.93e-14 70.1
Chna2g00479 . 34 490 GRAS Transcription Factor family AT5G48150 58.874 0.0 530.0
Chna5g02852 . 170 547 GRAS Transcription Factor family AT3G03450 29.381 2.35e-54 191.0
Chna00040268g00010 . 37 479 GRAS Transcription Factor family AT1G50420 63.657 0.0 576.0
Chna00040476g00003 . 1 525 GRAS Transcription Factor family AT4G17230 51.699 0.0 540.0
Chna1g01918 . 59 581 GRAS Transcription Factor family AT3G46600 45.455 1.05e-162 475.0
Chna00007325g00001 . 8 409 GRAS Transcription Factor family AT3G49950 44.869 3.89e-118 349.0
Chna9g00559 . 578 640 GRAS Transcription Factor family AT2G45160 58.73 3.18e-20 88.6
Chna4g02278 ACH 159 206 GRAS Transcription Factor family AT1G50420 66.667 1.96e-15 78.6
Chna6g03720 . 63 490 GRAS Transcription Factor family AT5G48150 70.534 0.0 623.0
Chna1g02413 . 35 405 GRAS Transcription Factor family AT5G41920 57.441 2.21e-144 414.0
Chna00040116g00004 . 8 409 GRAS Transcription Factor family AT3G49950 42.28 5.12e-104 313.0
Chna2g01199 . 140 596 GRAS Transcription Factor family AT1G50600 61.771 0.0 577.0
Chna5g02449 ACH 31 640 GRAS Transcription Factor family AT5G52510 41.486 6.57e-127 385.0
Chna5g02091 . 53 714 GRAS Transcription Factor family AT2G37650 45.147 0.0 548.0
Chna6g03411 . 1 530 GRAS Transcription Factor family AT4G37650 54.991 0.0 550.0
Chna7g04229 . 27 529 GRAS Transcription Factor family AT1G14920 48.544 2.35e-161 468.0
Chna5g02851 . 170 547 GRAS Transcription Factor family AT3G03450 29.049 8.41e-55 192.0
Chna2g00965 . 147 506 GRAS Transcription Factor family AT1G66350 37.018 1.03e-67 225.0
Chna4g00794 . 165 529 GRAS Transcription Factor family AT1G14920 34.884 1.01e-68 229.0
Chna8g00660 . 12 409 GRAS Transcription Factor family AT3G49950 61.259 0.0 519.0
Chna8g02988 . 91 554 GRAS Transcription Factor family AT4G00150 40.408 3.78e-102 317.0
Chna2g03679 ACH 103 555 GRAS Transcription Factor family AT4G00150 51.292 7.64e-159 464.0
Chna3g02407 . 163 348 GRAS Transcription Factor family AT3G03450 29.474 8.13e-12 63.2
Chna1g00247 . 152 524 GRAS Transcription Factor family AT4G17230 24.619 7.24e-16 78.2
Chna00039427g00056 . 16 593 GRAS Transcription Factor family AT1G21450 54.839 0.0 609.0
Chna5g03459 . 53 413 GRAS Transcription Factor family AT2G04890 32.208 3.84e-53 182.0
Chna1g00246 . 97 515 GRAS Transcription Factor family AT5G17490 23.81 1.69e-18 86.3
Chna8g00567 . 508 559 GRAS Transcription Factor family AT3G54220 52.83 4.00e-14 63.9
Chna1g01919 . 222 764 GRAS Transcription Factor family AT1G07530 46.931 2.83e-168 496.0
Chna00039044g00132 . 37 486 GRAS Transcription Factor family AT4G36710 47.122 6.79e-134 395.0
Chna2g02642 . 34 490 GRAS Transcription Factor family AT5G48150 59.307 0.0 534.0
Chna7g01677 . 296 650 GRAS Transcription Factor family AT3G54220 56.145 1.23e-142 422.0
Chna8g00626 . 56 584 GRAS Transcription Factor family AT5G66770 52.222 7.82e-173 499.0
Chna5g02853 . 170 547 GRAS Transcription Factor family AT3G03450 27.692 1.90e-50 179.0
Chna4g00087 . 7 510 GRAS Transcription Factor family AT3G13840 45.677 1.38e-153 447.0
Chna00040116g00005 . 8 409 GRAS Transcription Factor family AT3G49950 44.869 3.89e-118 349.0
Chna5g02928 ACH 97 555 GRAS Transcription Factor family AT4G00150 39.808 7.67e-105 326.0
Chna7g03013 . 38 490 GRAS Transcription Factor family AT5G48150 67.888 0.0 626.0
Chna5g00867 . 73 713 GRAS Transcription Factor family AT2G37650 51.75 0.0 635.0
Chna6g01900 . 21 530 GRAS Transcription Factor family AT1G14920 62.835 0.0 649.0
Chna2g00674 . 74 651 GRAS Transcription Factor family AT3G54220 67.157 0.0 738.0
Chna00006131g00002 . 396 766 GRAS Transcription Factor family AT1G07530 61.93 2.76e-165 479.0
Chna6g03561 . 161 529 GRAS Transcription Factor family AT1G14920 35.443 7.52e-76 248.0
Chna5g02854 . 170 547 GRAS Transcription Factor family AT3G03450 28.205 1.36e-49 177.0
Chna00038949g00035 . 141 530 GRAS Transcription Factor family AT4G37650 52.618 5.24e-140 409.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Chna GRAS 2.2e-133 CL0063 TF GRAS