AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00833 ATGGAGTCGATAATAGCTCGAGCGTTGGAGTACACATTGAAATACTGGCTTAAATCATTTACTAGAGATCAGTTTAAGCTACAAGGCAGAACTGTTCAGCTCTATAATCTAGATATAAATGGTGATGCCTTGCACGCGAGCCTCGGGTTGCCTCCGGCATTGAATGTTAAAACTGCGAAAGTCGGCAAGCTAGAGATAATACTCCCTTATTTGAGCAACGTACAAGTGGAGCCAATTGTTGTGCAAATCGATAAGCTTGATCTGGTGTTGGAGGAAAATGACGATTTGGATGCATATAAAAGTACAGAGAGTGCACAAACGCCATCCAGTCCAGCAAAAGGCAGTGGATATGGATTTGCGGACAAGATTGCAGATGGCATGACATTGGAAGTACGGACTGTCAATCTTTTAGTTGAGACTCATGGGGGTGCTAGACGTCGTGGAGGAGCAACTTGGGCATCACCGATGGCATCTATTACTATCCGCAACCTTTTGCTTTATACCACAAATGAGAACTGGCAGGTTGTAAATCTTAAGGAAGCGAGGGACTTTTCAAATGACAAGAAGTTCATCTATGTTTTCAAAAAGCTTGAATGGGAACATCTATCCATCGACCTCCTGCCTCACCCTGATATGTTTGCAGCATTTTCCGAGGGTGCATTTAAGGATGACGATGGTGCAAAGCGGGTGTTCTTTGGTGGGGAGCGCTTTCTTGAAGGGATATCTGGGGAAGCTTATATTACTATTCAAAGGACAGAGCTTAATAGTCCACTAGGGTTGGAACTCCAGTTACATATTACTGAAGCCGTGTGCCCAGCTTTGAGTGAACCAGGATTAAGGGCTCTTCTTCGCTTCTTTACTGGATTTTATGTCTGTCTGAATAGAGGCGATGTCAATCCAAATGCTCAAGAGCGATCAGCAGAAGCTGCAGGGCGCACACTAGTCTCCATTATGGTGGACCATATATTCTTTTGCATCAAGGATACTGATTTCCAGTTAGAACTTATGATGCAGTCACTTCTCTTTTCTCGGGCAAGTCTTTCTGATGGAGAAATCGCCAAATGCTTGACACGGGTGATGATAGGTGGAGTATTTCTGCGGGATACTTCCTCTCGCCCACCATGCGCGTTAGTGCAACCATCAATGCAGGATGCCACAGAGGAACCGCTGAAGATTCCAGATTTTGGAAAAGATTTCTGTCCTCCAATATATCCATTAGGGGATCAGCAATGGAAATTGAGTGACCGCATACATCTTCAAGAAGATTCCTGTCTAAGAATATCATCTTTACTAGCTGATGGAATTGTGGTTAATCATGGTGATATTTTACCAGATTATACTGTCAACTCCCTTGAATTGAAAGTCAAAGGTTTAGATATCACTGTTCCAATGGAATATCAGAACGAGAGCTCCTTCACTGGAGCAAGACTTCATATTGAGAACCTATTCTTTCATGACTCCCCTTCCCTGAGGCTCAAGCTGCTCAATCTTGACAAAGATCCCGCATGCTTCTGTTTATGGAAAGGACAACCCATTGACGCCAGCCAAAAAAAATGGACAAGTGGAGCTTCTCTTATTAATATGTCTCTAGAAACATGTAATAATTCAAAAGGAGTTAATGGGCCCCGTTCACACTCTTCGGAATTATGGAAATCTGTTGAGATAAAAGGTGTTTGTGTTCAAGTAGCAATGGTAACAGCAGATGGAAGCCCGTTAATAGAAATCCCACCTCCAGGAGGAGTTGTTAGGGTAGGAGTCGCTTGTGAACAATATCTGTCCAACACTTCCGTGGAGCAACTATTTTTTGTTTTGGATCTTTATACGTATTTTGGTACGGTTAGCGAGAAAATGGCATTGGTTGGAAAAAATAAACATAAGAAGGTGGTGAAGCGTGAGCTCTCTAATGGAAACCTGATAGAAAAGGTTCCTGGTGATACTGCTGTTAGTTTAGTAGTTAAGGACCTAAAGCTAACATTTCTAGAATCTTCCTCCATGGATATTCAGGGAATGCCTTTAGTTCAGTTTGTTGGGGAAGATCTGTTCATGGAAGTTACTCATAGAACCTTGGGTGGTGCCATGGCCATTTCGTCAACTTTAAAGTGGGACAGAGTTCAGGTGGAGTGTGCAGAAACTGAGATAAGCTCGGTACATACGAATGGTGTAGTTGTGAATGCTACCGAAGATTTTGTTCCTGTTCAAAATGGCTACCCAAAACTGAGAGCTGTCTTTTGGGTGCAAAATGGAAGTAACTTACCATTTGTGAATTTACGTATGGTGCATGTTATTCCGTATAATGCACAGGATACAGAGTGTCATAGTTTAAGTGTTTCGGCTTGTATTGCTGGTGTGCGCCTTGCAGGAGGAATGAGTTACGCTGAAGCTCTTCTTCACCGATTTGGAATTTTAGGACCAGATGGTGGGCCAGGGGTTGGGCTCTCCAAGGGTTTGGACCATTTATCTGCGGGCCCATTGTCGAAACTTTTCAAACGATCACCTCTGCTTGTAGAGACCGTCAGGGAGAGTAAAAGTGAAAGCGTAGAGGAGGAGAATCATATTGGTAACTTGCATTTGGGTGCGCCAGATGATGTAGATATATCACTAGAATTGAAGGACTGGTTATTTGCACTGGAGGGTGCAGATATGGCAGAAAAATGGTGGTTATATAGTTCAGAGGATTCTTACAGAGAAGAGAGGTGCTGGCACACAACCTTTGACAGTATAAAAGCTAAGGCAAACAGCAGCAAAAAGTCCTTAGTGAATGGAAAAAAGAATTTTCCTGGCTCAAAGAAGTATCCTGTCGAATCAATTACGGTTGGTATTGAAGGCTTAAAGACGCTAAAACCCCAGCAGCAGAAGGGAACTGCACCTCAGAACGGGCACAAGCAAATTGTTGAGTCACATGGTGGTGTCGATTTTGAAGCTGATATAGTCTTGAATGAAGATGATGATGTCGATGGGATGATCAAATGGGTTGAGGCATTTGTAACCAAGGATGAACTGCAACATGTTGCTCAACTATGCAAGTCAGAAGTTGATTCCATGGGACGAATAACTGCAGGATTTTTACGTGTGTTGAAGTTAGAAGGATCAGTTGGTCAGTCAGCAATGAATCAACTAAGCAACCTTGGAAGTGAAGGGTTTGACAAGATCTTCTCGCCAGAGAACCCGCGCAGAGATAGTACTGCTTCTAGTGTCGGTATGAGTCCGTTTTCCCTAGTGGCTTCAGATAACCAACATTCTTCGTCCTTCAATTCAACATTAAATTCACTCGAGGCTGCATTATTAGAATCACAGACAGATTGTGCAGCTCTTGTCACTGAACTAAGCAGTTCGGAATCTCCCAAGCCACACCTTCATAGTGTAGAACAACTTGCCCAGAAACTTGAGAGTATGCAGAAATTGTTATTAAAGTTGCAGACTGAGGTATAA 3429 42.99 MESIIARALEYTLKYWLKSFTRDQFKLQGRTVQLYNLDINGDALHASLGLPPALNVKTAKVGKLEIILPYLSNVQVEPIVVQIDKLDLVLEENDDLDAYKSTESAQTPSSPAKGSGYGFADKIADGMTLEVRTVNLLVETHGGARRRGGATWASPMASITIRNLLLYTTNENWQVVNLKEARDFSNDKKFIYVFKKLEWEHLSIDLLPHPDMFAAFSEGAFKDDDGAKRVFFGGERFLEGISGEAYITIQRTELNSPLGLELQLHITEAVCPALSEPGLRALLRFFTGFYVCLNRGDVNPNAQERSAEAAGRTLVSIMVDHIFFCIKDTDFQLELMMQSLLFSRASLSDGEIAKCLTRVMIGGVFLRDTSSRPPCALVQPSMQDATEEPLKIPDFGKDFCPPIYPLGDQQWKLSDRIHLQEDSCLRISSLLADGIVVNHGDILPDYTVNSLELKVKGLDITVPMEYQNESSFTGARLHIENLFFHDSPSLRLKLLNLDKDPACFCLWKGQPIDASQKKWTSGASLINMSLETCNNSKGVNGPRSHSSELWKSVEIKGVCVQVAMVTADGSPLIEIPPPGGVVRVGVACEQYLSNTSVEQLFFVLDLYTYFGTVSEKMALVGKNKHKKVVKRELSNGNLIEKVPGDTAVSLVVKDLKLTFLESSSMDIQGMPLVQFVGEDLFMEVTHRTLGGAMAISSTLKWDRVQVECAETEISSVHTNGVVVNATEDFVPVQNGYPKLRAVFWVQNGSNLPFVNLRMVHVIPYNAQDTECHSLSVSACIAGVRLAGGMSYAEALLHRFGILGPDGGPGVGLSKGLDHLSAGPLSKLFKRSPLLVETVRESKSESVEEENHIGNLHLGAPDDVDISLELKDWLFALEGADMAEKWWLYSSEDSYREERCWHTTFDSIKAKANSSKKSLVNGKKNFPGSKKYPVESITVGIEGLKTLKPQQQKGTAPQNGHKQIVESHGGVDFEADIVLNEDDDVDGMIKWVEAFVTKDELQHVAQLCKSEVDSMGRITAGFLRVLKLEGSVGQSAMNQLSNLGSEGFDKIFSPENPRRDSTASSVGMSPFSLVASDNQHSSSFNSTLNSLEAALLESQTDCAALVTELSSSESPKPHLHSVEQLAQKLESMQKLLLKLQTEV 1142
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00833 1142 PANTHER UNCHARACTERIZED 1 416 IPR026728 -
Chna2g00833 1142 Coils Coil 1121 1141 - -
Chna2g00833 1142 Pfam VPS13-like, N-terminal 1 104 IPR026854 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00833 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
58650 Chna2g00833 Chna6g03789
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1621766 Chna Chna2g00614 Chna-Chr2:44791601 Chna2g00833 Chna-Chr2:64326324
1632355 Chna Chna2g00833 Chna-Chr2:64326324 Chna6g03789 Chna-Chr6:324868248