AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00928 ATGAAGGCTCGTTTTGAGATAATTGCAGGGAAAAAGCTGAACATTGAAGAGAAAATAGATATCGTTCTATCATGGCCAAGTGAAGAAGTTCCATATGTGATTAAAGAATCCTTAGATGCTAATGAAGATATTGGTGTTGTTGAGGTTAGTAGCGCTATAAACGATGTTTTTGATATTGGTGAGAGTAATGTGGAAAGCATGGAAGTTCGTAGTGAGTTTAGCGAATTTTCAGAAAATAAAGACAGTGTGGAAGATGTTGTTGTGGGTGGTGGTGAAGCGTGTAGGGTTGACGAAGATGAGTCGAATATAGTGATATCACTACTTAAGGATGGAGGTGGAAAGGTTGGAAAAGAAAAAGAAGACGATTCACCCACTTCGGATGAGGTGAATAGCAATATAATACCATCTGCGTCTGTGCTAAGGCAGCTGGCTATAGGTGCTGAGACCACAAAAGTTATAAAGTCAATGAAGGATCTGATAATAGTATCAAGAGATTCTTCACCTGTGAAGGAGAGATCTGGGTTGAGCTTATCCGCTGTAAAGTCGTTTGTGGTGGGGGATAGAGATGATAAATTTGCTCTTGAGTTCGGTCGTGATGAAAAAGTAATGTCTTTTATCCAGTCACTGCAGAATCCAGAAGGAAATCTTTCTCGAAAGAAGACTGGGTCCCTCTTTGAGACGTATACGAGCATTACGAATTTTGCCAAAGAGCTTCATGGTGCTCCTCCCGAGAACTTTGTTACAGAGCTGGCTGAAGCTGTTGGAAGCTTAAGAACTTTAAAGAAAATGGCATTGTTTTGGTCCCGGGTCGTCGAAGAATTGAGAAGGCTATGGAGTGAAGGACAACATATTCCTGGAATCCCTGAAGATAGATTTCCAGATTTAAATTCCTGTTTGTTATATCAGCAATTGCAGGTTATAAATTGCTGTATATCTAGAAAACGCCGACGTGCTATTGTCACCGAATCATTAGAAGCTGTATTAAAGCAAGCTAAAAATAACGCTGACAAGTCACCTCCTGGAGGAAACATGGAAAACCCTCTTGTGTATGCTAAAGATAGCTCTGGTGAATATGTGCTTCGATTAGGAGCGGATAAACAGCTTGAAAACACGACACTTTTGGATACTGGTGAACCTGTGTATACTCCTGTTTTGCAGGAAGGGCCTTTACTCACAGAAGACGTTATTAAAGAAACAGAGGAATTTGTTTTACGTACCGGAAGCGTTGGTGCGGGCTGCTCTCAGCTTCTCTCGGATATGCAGGCTTTCAAGGCTGCAAATCCAGGGTGCATTTTAGAAGATTTTATTAGATGGCACTCACCCCCTGATTGGACCGAATCATTAACGGATGATGATACTAAAGAATCTGACGATGGGAATATTTCACCTTCAAGAGGACACCTGAGTATTCGTATGCGGAAAGCAGGTAATTTGTGGCGAGAACTTTGGGAAACTGCAAAACCGATACCTGCTGTTAGACAGTCACCACTATACTACGAGGATTTATCTGTGGAAGGGATTCTGCATGGCTTTGAGAATATCTCACCTTCTGGTTTCTTTGAGCAGCTCTTTCTTTCTCTTTTTGATGATATAAAACATTCACAATTTCAGCTCAGTTCTGGATGTGCAATTGCTGAGGCCAGTATATCGAGTAATGAATATCTGTACAGCCTGTTCAAGGAGTCCAAAGACTATATCATAATTACCTGTCAAGGTAAAAATTGGGTCGAGAAAGCGCAAGAGATATGCCAGGTCTATGAGACGGTGACAGTGATGGCATTGAACCCAGATCTGGTTATAAGGCTCACGAAGCCGAAACATGATCAAAACCCTGCAAGTGTCTTAGAAACACAATCAGAGGACCCAAAGAGCCAAAAAGACAGTCCTACAACAGTACTCTGCCCCACAATGTTTTCAAAGAAGCCACCCAAACCTACATCCCCTAATGAGAAACAAGTTGGTTTCTTCGATAATGAACTGATAGCAGATGCGGTCCTGCCCTTCAAAATATTGTAG 2016 41.62 MKARFEIIAGKKLNIEEKIDIVLSWPSEEVPYVIKESLDANEDIGVVEVSSAINDVFDIGESNVESMEVRSEFSEFSENKDSVEDVVVGGGEACRVDEDESNIVISLLKDGGGKVGKEKEDDSPTSDEVNSNIIPSASVLRQLAIGAETTKVIKSMKDLIIVSRDSSPVKERSGLSLSAVKSFVVGDRDDKFALEFGRDEKVMSFIQSLQNPEGNLSRKKTGSLFETYTSITNFAKELHGAPPENFVTELAEAVGSLRTLKKMALFWSRVVEELRRLWSEGQHIPGIPEDRFPDLNSCLLYQQLQVINCCISRKRRRAIVTESLEAVLKQAKNNADKSPPGGNMENPLVYAKDSSGEYVLRLGADKQLENTTLLDTGEPVYTPVLQEGPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFIRWHSPPDWTESLTDDDTKESDDGNISPSRGHLSIRMRKAGNLWRELWETAKPIPAVRQSPLYYEDLSVEGILHGFENISPSGFFEQLFLSLFDDIKHSQFQLSSGCAIAEASISSNEYLYSLFKESKDYIIITCQGKNWVEKAQEICQVYETVTVMALNPDLVIRLTKPKHDQNPASVLETQSEDPKSQKDSPTTVLCPTMFSKKPPKPTSPNEKQVGFFDNELIADAVLPFKIL 671
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00928 671 Pfam Rab3 GTPase-activating protein catalytic subunit 361 512 IPR026147 -
Chna2g00928 671 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 130 621 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(InterPro)|GO:0043547(PANTHER)
Chna2g00928 671 MobiDBLite consensus disorder prediction 446 461 - -
Chna2g00928 671 MobiDBLite consensus disorder prediction 610 651 - -
Chna2g00928 671 MobiDBLite consensus disorder prediction 610 635 - -
Chna2g00928 671 MobiDBLite consensus disorder prediction 446 466 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00928 K18270 Rab3 GTPase-activating protein catalytic subunit
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Event-related genes

Select Gene_1 Gene_2 Event_name
58663 Chna2g00928 Chna6g03845
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:70574999 Chna2g04465 Chna-Chr2:419273024 dispersed
Chna Chna-Chr2:378444977 Chna2g00928 Chna-Chr2:70574999 transposed
Chna Chna-Chr2:70574999 Chna6g03845 Chna-Chr6:327668192 wgd