Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g00928 | ATGAAGGCTCGTTTTGAGATAATTGCAGGGAAAAAGCTGAACATTGAAGAGAAAATAGATATCGTTCTATCATGGCCAAGTGAAGAAGTTCCATATGTGATTAAAGAATCCTTAGATGCTAATGAAGATATTGGTGTTGTTGAGGTTAGTAGCGCTATAAACGATGTTTTTGATATTGGTGAGAGTAATGTGGAAAGCATGGAAGTTCGTAGTGAGTTTAGCGAATTTTCAGAAAATAAAGACAGTGTGGAAGATGTTGTTGTGGGTGGTGGTGAAGCGTGTAGGGTTGACGAAGATGAGTCGAATATAGTGATATCACTACTTAAGGATGGAGGTGGAAAGGTTGGAAAAGAAAAAGAAGACGATTCACCCACTTCGGATGAGGTGAATAGCAATATAATACCATCTGCGTCTGTGCTAAGGCAGCTGGCTATAGGTGCTGAGACCACAAAAGTTATAAAGTCAATGAAGGATCTGATAATAGTATCAAGAGATTCTTCACCTGTGAAGGAGAGATCTGGGTTGAGCTTATCCGCTGTAAAGTCGTTTGTGGTGGGGGATAGAGATGATAAATTTGCTCTTGAGTTCGGTCGTGATGAAAAAGTAATGTCTTTTATCCAGTCACTGCAGAATCCAGAAGGAAATCTTTCTCGAAAGAAGACTGGGTCCCTCTTTGAGACGTATACGAGCATTACGAATTTTGCCAAAGAGCTTCATGGTGCTCCTCCCGAGAACTTTGTTACAGAGCTGGCTGAAGCTGTTGGAAGCTTAAGAACTTTAAAGAAAATGGCATTGTTTTGGTCCCGGGTCGTCGAAGAATTGAGAAGGCTATGGAGTGAAGGACAACATATTCCTGGAATCCCTGAAGATAGATTTCCAGATTTAAATTCCTGTTTGTTATATCAGCAATTGCAGGTTATAAATTGCTGTATATCTAGAAAACGCCGACGTGCTATTGTCACCGAATCATTAGAAGCTGTATTAAAGCAAGCTAAAAATAACGCTGACAAGTCACCTCCTGGAGGAAACATGGAAAACCCTCTTGTGTATGCTAAAGATAGCTCTGGTGAATATGTGCTTCGATTAGGAGCGGATAAACAGCTTGAAAACACGACACTTTTGGATACTGGTGAACCTGTGTATACTCCTGTTTTGCAGGAAGGGCCTTTACTCACAGAAGACGTTATTAAAGAAACAGAGGAATTTGTTTTACGTACCGGAAGCGTTGGTGCGGGCTGCTCTCAGCTTCTCTCGGATATGCAGGCTTTCAAGGCTGCAAATCCAGGGTGCATTTTAGAAGATTTTATTAGATGGCACTCACCCCCTGATTGGACCGAATCATTAACGGATGATGATACTAAAGAATCTGACGATGGGAATATTTCACCTTCAAGAGGACACCTGAGTATTCGTATGCGGAAAGCAGGTAATTTGTGGCGAGAACTTTGGGAAACTGCAAAACCGATACCTGCTGTTAGACAGTCACCACTATACTACGAGGATTTATCTGTGGAAGGGATTCTGCATGGCTTTGAGAATATCTCACCTTCTGGTTTCTTTGAGCAGCTCTTTCTTTCTCTTTTTGATGATATAAAACATTCACAATTTCAGCTCAGTTCTGGATGTGCAATTGCTGAGGCCAGTATATCGAGTAATGAATATCTGTACAGCCTGTTCAAGGAGTCCAAAGACTATATCATAATTACCTGTCAAGGTAAAAATTGGGTCGAGAAAGCGCAAGAGATATGCCAGGTCTATGAGACGGTGACAGTGATGGCATTGAACCCAGATCTGGTTATAAGGCTCACGAAGCCGAAACATGATCAAAACCCTGCAAGTGTCTTAGAAACACAATCAGAGGACCCAAAGAGCCAAAAAGACAGTCCTACAACAGTACTCTGCCCCACAATGTTTTCAAAGAAGCCACCCAAACCTACATCCCCTAATGAGAAACAAGTTGGTTTCTTCGATAATGAACTGATAGCAGATGCGGTCCTGCCCTTCAAAATATTGTAG | 2016 | 41.62 | MKARFEIIAGKKLNIEEKIDIVLSWPSEEVPYVIKESLDANEDIGVVEVSSAINDVFDIGESNVESMEVRSEFSEFSENKDSVEDVVVGGGEACRVDEDESNIVISLLKDGGGKVGKEKEDDSPTSDEVNSNIIPSASVLRQLAIGAETTKVIKSMKDLIIVSRDSSPVKERSGLSLSAVKSFVVGDRDDKFALEFGRDEKVMSFIQSLQNPEGNLSRKKTGSLFETYTSITNFAKELHGAPPENFVTELAEAVGSLRTLKKMALFWSRVVEELRRLWSEGQHIPGIPEDRFPDLNSCLLYQQLQVINCCISRKRRRAIVTESLEAVLKQAKNNADKSPPGGNMENPLVYAKDSSGEYVLRLGADKQLENTTLLDTGEPVYTPVLQEGPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFIRWHSPPDWTESLTDDDTKESDDGNISPSRGHLSIRMRKAGNLWRELWETAKPIPAVRQSPLYYEDLSVEGILHGFENISPSGFFEQLFLSLFDDIKHSQFQLSSGCAIAEASISSNEYLYSLFKESKDYIIITCQGKNWVEKAQEICQVYETVTVMALNPDLVIRLTKPKHDQNPASVLETQSEDPKSQKDSPTTVLCPTMFSKKPPKPTSPNEKQVGFFDNELIADAVLPFKIL | 671 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g00928 | 671 | Pfam | Rab3 GTPase-activating protein catalytic subunit | 361 | 512 | IPR026147 | - | |
| Chna2g00928 | 671 | PANTHER | RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT | 130 | 621 | IPR045700 | GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(InterPro)|GO:0043547(PANTHER) | |
| Chna2g00928 | 671 | MobiDBLite | consensus disorder prediction | 446 | 461 | - | - | |
| Chna2g00928 | 671 | MobiDBLite | consensus disorder prediction | 610 | 651 | - | - | |
| Chna2g00928 | 671 | MobiDBLite | consensus disorder prediction | 610 | 635 | - | - | |
| Chna2g00928 | 671 | MobiDBLite | consensus disorder prediction | 446 | 466 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g00928 | K18270 | Rab3 GTPase-activating protein catalytic subunit |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 58663 | Chna2g00928 | Chna6g03845 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chna | Chna-Chr2:70574999 | Chna2g04465 | Chna-Chr2:419273024 | dispersed | |
| Chna | Chna-Chr2:378444977 | Chna2g00928 | Chna-Chr2:70574999 | transposed | |
| Chna | Chna-Chr2:70574999 | Chna6g03845 | Chna-Chr6:327668192 | wgd |