AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g00945 | ATGAGCATGGAAACAGAAAGTGTTGTAGCGAAGCTCAAGAGTTGTGGATTGTTTCGAACCAAAGGTCTTATTGGAGGCAAATGGGTTGATGCATACGACGAGAGGACCCTCGAGGTTATCAACCCTGCTAATGGCGAAGTTATAGCTTCTGTTCCGTTCATGGGCGAAAGGGAAACAAAGGATGCGATTGCTTCAGCCTACGATGCTTTTACCCTTTGGAGCAAGCTTGCTGCTGCTGACAGGAGTAGGCGCCTACGCAAATGGTATAACTTACTGATTGAACACAAACAAGAACTTGCACAACTTATAACTTTGGAGCAAGGAAAACCTCTAAGAGAAGCCATTGGGGAGGTGATATATGCTGCTAATTTCATCGACTACTTTGCGGAGGAGGCAAAACGTGTTTATGGTGATATAATTCCATCGCCATATCCTGATCGCCGTCTGTTTGTTCTAAAACAGCCTGTTGGTGTCGTTGCTGCAATCACTCCATGGAATTTCCCCTTGGCAATGATTACTCGGAAGGCTGGACCTGCTCTTGCATGTGGGTGTACTGTGGTCATAAAGCCCTCTGAGCTCACACCATTAACCGCCTTAGCAGCAGTAGAGCTTGCCATTCAATCAGGAATCCCACCAGGTGTTTTAAATATTGTCATGGGAGATGCTCCTAGTATCGGAAAGGCTTTACTTGAGAGCCCACAAGTAATGAAGATAACGTTTACTGGCTCAACTGCAGTTGGAAAGAAATTGATGGCTGGTGCAGCCGAGACTGTCAAAAAGGTATCTCTTGAACTTGGTGGCAATGCACCTTGTGTAATCTTCGATGATGCTGACCTGGAAGTGGCATTGAAGGGGACCTTGTCAACTAAATTTCTTAATACTGGACAAGCATGTATATCTGTAAATAGATTACTTGTCCAAGAAGGCATATATGAGAAGTTTACAAATGCATTATCAAATGCTGTTCAGAACATGAAAGTTGGCAATGGCTTTAGTGAAGGTGTGGCCCAGGGACCACTTATCAATGAAGCTGCTGTCCAAAAGGTTGAATCATTTTTGCAAGATGCAATCTCTAAGGGAGCCAAAGTTCTTCTCGGTGGTAAGAGGCATAGCCTTGGCATGACTTTTTATGAGCCTACGATTATTGGTGATGTCAATAATGAGATGATCATAGCAAGTATTAAGCGTTCATGGCGTGTATCTGAAGCTCTTGAATATGGTATGGTTGGAGTCAATGAGGGATCAATTTCAACAGAGGTGGCTCCATTTGGAGGTGTTAAGGAGTCTGGTTTGGGACGCGAAGGTTCTAAATATGGATTGGATGAGTATCTTGAAGTCAAGTACATTTGTATGGGAAACATGGGCTGA | 1368 | 43.86 | MSMETESVVAKLKSCGLFRTKGLIGGKWVDAYDERTLEVINPANGEVIASVPFMGERETKDAIASAYDAFTLWSKLAAADRSRRLRKWYNLLIEHKQELAQLITLEQGKPLREAIGEVIYAANFIDYFAEEAKRVYGDIIPSPYPDRRLFVLKQPVGVVAAITPWNFPLAMITRKAGPALACGCTVVIKPSELTPLTALAAVELAIQSGIPPGVLNIVMGDAPSIGKALLESPQVMKITFTGSTAVGKKLMAGAAETVKKVSLELGGNAPCVIFDDADLEVALKGTLSTKFLNTGQACISVNRLLVQEGIYEKFTNALSNAVQNMKVGNGFSEGVAQGPLINEAAVQKVESFLQDAISKGAKVLLGGKRHSLGMTFYEPTIIGDVNNEMIIASIKRSWRVSEALEYGMVGVNEGSISTEVAPFGGVKESGLGREGSKYGLDEYLEVKYICMGNMG | 455 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g00945 | 455 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 393 | 454 | IPR016163 | GO:0016620(InterPro) | |
| Chna2g00945 | 455 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 267 | 392 | IPR016163 | GO:0016620(InterPro) | |
| Chna2g00945 | 455 | FunFam | Aldehyde dehydrogenase, putative | 421 | 447 | - | - | |
| Chna2g00945 | 455 | CDD | ALDH-F5-SSADH-GabD | 39 | 451 | - | - | |
| Chna2g00945 | 455 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 263 | 270 | IPR029510 | GO:0016491(InterPro) | |
| Chna2g00945 | 455 | FunFam | Succinate-semialdehyde dehydrogenase I | 34 | 278 | - | - | |
| Chna2g00945 | 455 | Pfam | Aldehyde dehydrogenase family | 393 | 449 | IPR015590 | GO:0016491(InterPro) | |
| Chna2g00945 | 455 | Pfam | Aldehyde dehydrogenase family | 28 | 392 | IPR015590 | GO:0016491(InterPro) | |
| Chna2g00945 | 455 | PANTHER | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL | 393 | 454 | IPR050740 | GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER) | |
| Chna2g00945 | 455 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 34 | 266 | IPR016162 | GO:0016491(InterPro) | |
| Chna2g00945 | 455 | SUPERFAMILY | ALDH-like | 16 | 453 | IPR016161 | GO:0016491(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g00945 | K17761 | succinate-semialdehyde dehydrogenase, mitochondrial [EC:1.2.1.24] | ||||
| Chna2g00945 | K00135 | succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chna | Chna-Chr2:72126737 | Chna4g03348 | Chna-Chr4:261152735 | dispersed | |
| Chna | Chna-Chr2:72067272 | Chna2g00945 | Chna-Chr2:72126737 | tandem | |
| Chna | Chna-Chr2:72126737 | Chna2g00946 | Chna-Chr2:72137154 | tandem |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chna7g00715 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 89.113 | 0.0 | 933.0 | |
| Chna2g01214 | ACH | 86 | 606 | Aldehyde Dehydrogenase gene family | AT2G14170 | 74.761 | 0.0 | 786.0 | |
| Chna5g03586 | ACH | 316 | 556 | Aldehyde Dehydrogenase gene family | AT5G62530 | 82.988 | 4.71e-149 | 432.0 | |
| Chna5g04737 | . | 179 | 222 | Aldehyde Dehydrogenase gene family | AT1G79440 | 59.091 | 3.42e-07 | 45.4 | |
| Chna7g04267 | . | 36 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.67 | 0.0 | 670.0 | |
| Chna6g02966 | . | 6 | 484 | Aldehyde Dehydrogenase gene family | AT1G44170 | 64.718 | 0.0 | 670.0 | |
| Chna2g03940 | . | 77 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 67.294 | 0.0 | 602.0 | |
| Chna4g03348 | . | 33 | 292 | Aldehyde Dehydrogenase gene family | AT1G79440 | 57.854 | 1.98e-84 | 265.0 | |
| Chna00040973g00002 | . | 79 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 66.478 | 0.0 | 746.0 | |
| Chna00038191g00006 | . | 215 | 256 | Aldehyde Dehydrogenase gene family | AT3G48000 | 52.381 | 1.63e-08 | 49.7 | |
| Chna3g01074 | . | 116 | 237 | Aldehyde Dehydrogenase gene family | AT1G23800 | 76.23 | 5.94e-66 | 210.0 | |
| Chna4g01064 | . | 5 | 501 | Aldehyde Dehydrogenase gene family | AT1G74920 | 78.27 | 0.0 | 848.0 | |
| Chna9g01765 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 75.601 | 0.0 | 868.0 | |
| Chna7g04270 | . | 7 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.283 | 0.0 | 714.0 | |
| Chna4g01363 | . | 8 | 484 | Aldehyde Dehydrogenase gene family | AT4G36250 | 61.216 | 0.0 | 612.0 | |
| Chna5g00780 | . | 153 | 321 | Aldehyde Dehydrogenase gene family | AT3G24503 | 63.953 | 2.06e-61 | 217.0 | |
| Chna9g02066 | . | 1 | 483 | Aldehyde Dehydrogenase gene family | AT4G36250 | 55.28 | 0.0 | 573.0 | |
| Chna3g03335 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 85.915 | 0.0 | 894.0 | |
| Chna2g03763 | . | 394 | 516 | Aldehyde Dehydrogenase gene family | AT3G48000 | 67.48 | 5.87e-53 | 182.0 | |
| Chna3g03339 | . | 1 | 496 | Aldehyde Dehydrogenase gene family | AT2G24270 | 85.915 | 0.0 | 893.0 | |
| Chna6g02941 | . | 6 | 484 | Aldehyde Dehydrogenase gene family | AT1G44170 | 65.136 | 0.0 | 672.0 | |
| Chna2g00946 | . | 15 | 516 | Aldehyde Dehydrogenase gene family | AT1G79440 | 75.992 | 0.0 | 779.0 | |
| Chna7g04266 | ACH | 6 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 63.71 | 0.0 | 679.0 | |
| Chna3g03144 | . | 54 | 121 | Aldehyde Dehydrogenase gene family | AT1G23800 | 42.254 | 9.90e-09 | 53.9 | |
| Chna1g00570 | . | 325 | 484 | Aldehyde Dehydrogenase gene family | AT1G44170 | 63.75 | 7.66e-71 | 227.0 | |
| Chna9g03907 | . | 497 | 531 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.0 | 6.90e-12 | 62.0 | |
| Chna4g01003 | ACH | 25 | 238 | Aldehyde Dehydrogenase gene family | AT5G62530 | 75.701 | 6.46e-121 | 353.0 | |
| Chna6g02934 | . | 377 | 410 | Aldehyde Dehydrogenase gene family | AT1G44170 | 52.941 | 8.00e-06 | 47.4 | |
| Chna2g02046 | ACH | 174 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.598 | 5.46e-170 | 480.0 | |
| Chna6g04520 | . | 189 | 213 | Aldehyde Dehydrogenase gene family | AT1G79440 | 68.0 | 1.25e-06 | 42.4 | |
| Chna7g00577 | . | 226 | 298 | Aldehyde Dehydrogenase gene family | AT3G24503 | 56.25 | 1.66e-17 | 84.0 | |
| Chna2g00945 | . | 34 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 68.089 | 0.0 | 680.0 | |
| Chna1g02607 | . | 177 | 283 | Aldehyde Dehydrogenase gene family | AT3G66658 | 84.112 | 1.07e-60 | 195.0 | |
| Chna2g00944 | . | 36 | 525 | Aldehyde Dehydrogenase gene family | AT1G79440 | 73.146 | 0.0 | 750.0 | |
| Chna7g04269 | . | 7 | 501 | Aldehyde Dehydrogenase gene family | AT3G24503 | 68.283 | 0.0 | 718.0 | |
| Chna8g02248 | . | 18 | 69 | Aldehyde Dehydrogenase gene family | AT1G74920 | 61.538 | 3.17e-16 | 73.6 | |
| Chna00002052g00001 | . | 430 | 516 | Aldehyde Dehydrogenase gene family | AT3G48000 | 71.264 | 8.09e-40 | 137.0 | |
| Chna4g01120 | . | 1 | 538 | Aldehyde Dehydrogenase gene family | AT3G48000 | 72.274 | 0.0 | 777.0 | |
| Chna1g02608 | . | 177 | 284 | Aldehyde Dehydrogenase gene family | AT3G66658 | 83.333 | 2.73e-60 | 191.0 | |
| Chna7g02737 | ACH | 79 | 607 | Aldehyde Dehydrogenase gene family | AT2G14170 | 66.478 | 0.0 | 746.0 | |
| Chna5g02858 | . | 1 | 545 | Aldehyde Dehydrogenase gene family | AT3G66658 | 80.55 | 0.0 | 925.0 |