AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00955 ATGAACAAACTAGGAAGAGGGCATCGCGACAAGATTCAACAGTTTGTGACTATCACTGGAGCAAGTGAAAAAGTTGCTACTCAGGCCTTGAAGGCCAGTGATTGGCACCTGGATGATCCTTATGCTGATATGATTATGGCTGATGGTATCAGCAATCTATGCAATGACCTCCAGGTTGATCCTCAAGATATCGTAATGCTAGTTGTTTCGTGGCACATGAAGGCTGCTACAATGTGTGAATTCTCAAAGCAGGAATTTGTTGGTGGCTTGCAGTCTCTCGGGATAGATTCACTGGAAAAGTTCCGTGATCGTTTACCATCTATACGTTCTGAGCTGAAAGACGACCAAAAATTCAAGGAGATCTATAATTTTGCTTTCGGCTGGGCAAAGGAGAAGGGTCAGAAGTCTCTTGCATTGGACACAGCAATAGGAATGTGGCAGTTGCTGTTTGAAGAAAAACAGTGGCCATTGGTTGAACATTGGTGCCAGTTCTTACAGGCACGGCATAACAAAGCTATTTCTAGAGACACGTGGTCTCAACTGCTGGAATTTGCACGAAGTGTGGATCCTACACTATCAAATTACGATGCTGAAGGTGCCTGGCCATATCTACTTGATGAATTTGTTGAGTACCTAAAGGAGAACAACATAATTCAACAAAAGGGTCATGTGCTCGATTTGCTTGGCCACATCTGA 696 43.68 MNKLGRGHRDKIQQFVTITGASEKVATQALKASDWHLDDPYADMIMADGISNLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDSLEKFRDRLPSIRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVEHWCQFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLLDEFVEYLKENNIIQQKGHVLDLLGHI 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00955 231 Gene3D Cullin, PONY binding domain 114 223 IPR042460 -
Chna2g00955 231 Gene3D - 28 113 - -
Chna2g00955 231 SUPERFAMILY UBA-like 7 38 IPR009060 GO:0005515(InterPro)
Chna2g00955 231 ProSiteProfiles DCUN1 domain profile. 17 213 IPR005176 -
Chna2g00955 231 PANTHER RP42 RELATED 38 215 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Chna2g00955 231 FunFam DCN1-like protein 27 113 - -
Chna2g00955 231 Pfam Cullin binding 101 211 IPR005176 -
Chna2g00955 231 Pfam UBA-like domain 9 38 - -
Chna2g00955 231 FunFam Defective in cullin neddylation protein 114 219 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00955 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:72682743 Chna7g03932 Chna-Chr7:327439089 dispersed