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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00957 ATGGCATTTTCATCAGTTGTTGGATCATCTGTCAACACATCAATTGTGTTTGATTCACATCGTCAATCATTACCCACCTCTTCTTTTGTTAATAGATCACAATTTAAGGTTCAGTCCACTGCAGATTCTCCATGTTTAAGGGTGAATAATGCGCGATGTGTGACTTCGATTAAAGCGACCGCTGCTACGCAGGTGCCACCAAGTGTTGCAAAGTCCGGTAGCGGAGGGAAGACCAAGGTTGGAATTAATGGTTTTGGAAGAATTGGAAGGTTGGTGTTGAGAATCGCATCATTTAGAGATGATATTGAGGTTGTTGCGGTCAACGACCCTTTTATTAACTCCGAATACATGGCTTACATGTTGAAGTATGATTCTACTCATGGCCTATTTAAAGGAACCATCAATGTTGTTGATGAGTCTACTTTGGAAATCAACGGGAAACAAATCAAAGTGAACAACCAAAGAGACCCTGCAGCGATTCCTTGGGGTGCTTCTGGAGCTGACTATGTTGTTGAATCTTCTGGTGTTTTTACAACACTTGATTCGGCTTCAGCACACAAAAAGGGTGGTGCGAAGAAGGTAGTGATCTCAGCTCCATCAGCTGATGCGCCTATGTTTGTTGTAGGAGTAAATGAGACCACTTACAAATCAAACATGGATATTGTATCCAATGCGAGCTGCACAACTAATTGCTTGGCTCCTTTGGCCAAGGTGGTTCATGAGGAGTTTGGTATTGTTGAAGGTTTGATGACAACTGTTCATGCTACCACAGCTACACAAAAAACTGTCGATGGACCTTCGATGAAGGATTGGCGTGGTGGTCGTGGTGCTGCACAAAACATCATCCCTAGCTCAACTGGTGCAGCCAAGGCTGTAGGGAAGGTGTTACCGGAACTAAATGGAAAACTCACAGGCATGGCCTTTAGAGTCCCAACAGCAAATGTCTCCGTTGTGGATTTAACTTGTCGACTTGAGAAAAGTGCTTCTTATGAAGATGTTAAAGCTGCTATAAAGTATGCCTCTGAGGGTCCACTGCAAGGAATCCTTGGATACACTGATGAGGATGTTGTCTCCAATGACTTCGTTGGTGATTCCAGGTCGAGTATATTTGATGCAAAGGCTGGGATAGGGCTAAGTGCGTCATTTGTGAAGTTGGTGTCCTGGTATGATAACGAGTGGGGTTACAGCAACCGAGTGTTGGACCTGATTGAGCATATGGCGTTGGTGGCAGCTTCCAACTAA 1242 44.2 MAFSSVVGSSVNTSIVFDSHRQSLPTSSFVNRSQFKVQSTADSPCLRVNNARCVTSIKATAATQVPPSVAKSGSGGKTKVGINGFGRIGRLVLRIASFRDDIEVVAVNDPFINSEYMAYMLKYDSTHGLFKGTINVVDESTLEINGKQIKVNNQRDPAAIPWGASGADYVVESSGVFTTLDSASAHKKGGAKKVVISAPSADAPMFVVGVNETTYKSNMDIVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTANVSVVDLTCRLEKSASYEDVKAAIKYASEGPLQGILGYTDEDVVSNDFVGDSRSSIFDAKAGIGLSASFVKLVSWYDNEWGYSNRVLDLIEHMALVAASN 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00957 413 FunFam Glyceraldehyde-3-phosphate dehydrogenase 78 237 - -
Chna2g00957 413 SMART gp-dh-n-7 78 227 IPR020828 GO:0051287(InterPro)
Chna2g00957 413 FunFam Glyceraldehyde-3-phosphate dehydrogenase 226 391 - -
Chna2g00957 413 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 73 407 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 243 IPR036291 -
Chna2g00957 413 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 226 389 - -
Chna2g00957 413 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 345 360 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 221 239 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 186 199 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 305 322 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 248 264 IPR020831 GO:0016620(InterPro)
Chna2g00957 413 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 79 401 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Chna2g00957 413 Gene3D - 79 406 - -
Chna2g00957 413 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 225 232 IPR020830 GO:0016620(InterPro)
Chna2g00957 413 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 232 389 IPR020829 GO:0016620(InterPro)
Chna2g00957 413 Gene3D Dihydrodipicolinate Reductase; domain 2 227 393 - -
Chna2g00957 413 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 79 179 IPR020828 GO:0051287(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00957 K00134 glyceraldehyde 3-phosphate dehydrogenase (phosphorylating) [EC:1.2.1.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:72707221 Chna4g00793 Chna-Chr4:38063948 dispersed
Chna Chna-Chr2:72691094 Chna2g00957 Chna-Chr2:72707221 tandem