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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g00997 ATGGGTGATAGTCAGTACTCCTTTTCGCTAACTACTTTCAGTCCTTCTGGTAAGCTTGTTCAGATTGAACATGCTCTCACAGCTGTTGGCTCAGGTCAAACTTCATTGGGGATTAAAGCTTCTAATGGGGTCGTGATTGCAACGGAAAAGAAGCTTCCATCCATTTTAGTCGACGAGACATCTGTGCAAAAGATCCAGATCTTGACTCCCAATATAGGAGTTGTATACAGTGGAATGGGACCTGATTCTCGAGTTCTAGTCAGGAAGAGTAGGAAGCAGGCAGAGCAGTACCACCGGCTATACAAAGAGCCCATCCCTGTTACACAACTTGTAAGGGAAACCGCGGCTGTTATGCAAGAGTTTACTCAGTCTGGTACGAAGTATTTTAGATGGAATCCTTTCATTGAGGTGGACCCCTCAGGTTCTTATTTCTCCTGGAAAGCTTCGGCCATGGGAAAGAATGTGTCTAATGCAAAGACATTTTTAGAAAAGAGGTACACTGATGATATGGAGCTTGAGGATGCGATACACACAGCTATTTTAACATTGAAGGAGGGGCCGTTAATTACAATGTATTACTTGCCTAGCTCATGTCAAATATATTTGAAGGACAAATATCTGGCAAAAACATTGAGATTGGTGTTATTGAGGCTGACAGAACATTCAGGCAAAGTTCTAACTGCAGCTCAGATTGAAGACTATCTTCAAGAAGTGGAATAG 720 42.5 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDETSVQKIQILTPNIGVVYSGMGPDSRVLVRKSRKQAEQYHRLYKEPIPVTQLVRETAAVMQEFTQSGTKYFRWNPFIEVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELEDAIHTAILTLKEGPLITMYYLPSSCQIYLKDKYLAKTLRLVLLRLTEHSGKVLTAAQIEDYLQEVE 239
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g00997 239 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 239 IPR029055 -
Chna2g00997 239 PANTHER PROTEASOME SUBUNIT ALPHA-BETA 4 186 IPR050115 GO:0010498(PANTHER)|GO:0019773(PANTHER)
Chna2g00997 239 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Chna2g00997 239 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 5 185 IPR029055 -
Chna2g00997 239 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Chna2g00997 239 SMART Proteasome-A-N-2 6 28 IPR000426 GO:0006511(InterPro)|GO:0019773(InterPro)
Chna2g00997 239 Pfam Proteasome subunit 31 185 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Chna2g00997 239 ProSiteProfiles Proteasome alpha-type subunit profile. 21 235 IPR023332 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g00997 K02726 20S proteasome subunit alpha 2 [EC:3.4.25.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:77794440 Chna8g01995 Chna-Chr8:160660186 dispersed
Chna Chna-Chr2:76496879 Chna2g00997 Chna-Chr2:77794440 proximal