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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g01033 ATGGATTCCATGGTGTTTTGTTCAAAACCCATTTGGTTTCATTCCCCCAAAACCCTTTTTACAAGTAGTAGGTCTATATCAATGTTTGCCGCCAAAAAAACCAGAGTTGTTTCACATCTTGAGTCTAGAGTTAATGGCTCTCTTTCCTCATCTGACCCTGATTCTTTATTTCTTGACCGGCAAAAAGCATTGGAAGCTGCAATGAATGACATTAACAGCTCATTTGGGAAAGGGAGTGTGACGAGGCTTGGTAGTCTTGGTGGAGCTCTTGTTGAAACATTTCCAAGTGGTTGTCTTCCCTTAGACCTTGCGTTAGGAGGTGGCCTTCCTAAAGGAAGAATTATTTACGGACCTGAAAGTAGTGGAAAGACCACTTTGGCACTACATGCCATTGCAGAAGTGCAGAAACTAGGAGGCAATGCGATGCTTGTTGATGCAGAGCATGCTTTTGATCCATCATATTCTAAAGCATTAGGAGTGGATGTGGAAAATTTAATTGTTTGCCAACCAGACAATGGAGAGATGGCACTTGAGATTGCAGACCGTATGTGTAGATCTGGTGCGGTTGATCTCATTTGCATTGACTCTGTCTCTGCTCTTACTCCACGAGCTGAGATTGAAGGGGAAATTGGAATGCAGCAAATGGGCTTGCAAGCACGTCTTATGAGTCAAGCATTACGTAAGATGTCAGGAAATGCATCTAAAGCTGGATGTACACTTATCTTTCTTAACCAAATAAGATACAAGATTGGAGTTTATTATGGAAATCCAGAAGTTACAAGTGGAGGTATCGCCTTAAAGTTTTTTGCATCTGTTCGACTTGAAATACGGCCTATAGGGAAGATAAAGTCTGTCAAAGGTGATGAGGACATCGGGCTTAAGGTCCGCGTAAGAGTTCAAAAGAGTAAGGTGAATACCATTTTTTCTTTTACAATTAGTACATCCCACCAAAAAGAAATTGAATGTACAATTAGGAAACAGTCTCAAGACCATACAAGCAAGCGGAGTTTGAAATTATATTTGGAGAGGGAGCCAGCAAAATGGTTGGGGCAAGGTAGAGACAGGGCGTTGCAGTACCTGCGAGAAAACCTTCCCCTTTGTGATGAAATAGAAAAGCTTGTGAGGTCAGCAATGGTAGATGGAACCGGGCAAGCAATTACGTCCTACGCTCGACAATCTACACCACTCATTGAAGAGGATGAATTACTAGAAGAACTACAGTGA 1224 41.99 MDSMVFCSKPIWFHSPKTLFTSSRSISMFAAKKTRVVSHLESRVNGSLSSSDPDSLFLDRQKALEAAMNDINSSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDIGLKVRVRVQKSKVNTIFSFTISTSHQKEIECTIRKQSQDHTSKRSLKLYLEREPAKWLGQGRDRALQYLRENLPLCDEIEKLVRSAMVDGTGQAITSYARQSTPLIEEDELLEELQ 407
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g01033 407 SMART AAA-5 111 280 IPR003593 GO:0016887(InterPro)
Chna2g01033 407 PRINTS RecA protein signature 145 174 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 PRINTS RecA protein signature 217 246 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 PRINTS RecA protein signature 262 290 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 PRINTS RecA protein signature 179 208 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 PRINTS RecA protein signature 349 366 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 Pfam recA bacterial DNA recombination protein 62 308 IPR049428 -
Chna2g01033 407 ProSiteProfiles RecA family profile 1. 90 246 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Chna2g01033 407 NCBIfam recombinase RecA 59 375 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 307 IPR027417 -
Chna2g01033 407 PANTHER RECA 43 385 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chna2g01033 407 Pfam RecA C-terminal domain 349 378 IPR049261 -
Chna2g01033 407 ProSiteProfiles RecA family profile 2. 251 304 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Chna2g01033 407 Gene3D - 337 378 - -
Chna2g01033 407 CDD RecA 91 304 - -
Chna2g01033 407 ProSitePatterns recA signature. 265 273 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Chna2g01033 407 Gene3D - 89 323 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g01033 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr1:166436949 Chna2g01033 Chna-Chr2:82052544 dispersed
Chna Chna-Chr2:82052544 Chna7g03957 Chna-Chr7:328557941 dispersed