AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g01101 | ATGAAGCTCGTCAGGTTTTTGATGAAGTTGAACAACGAAACAGTCTCGATTGAGCTTAAAAATGGTACAGTTGTACATGGAACCATTACAGGTGTTGATATCAGCATGAACACACACTTGAAGACGGTGAAGTTGACATTGAAAGGGAAGAATCCTGTAACCCTTGACCATTTGAGCGGAAGCCTGTGGGACGTGGACGGGGCCGAGGGCGAGGCCGTGGACGTGGACGTGGTCGTTAGTCATGTTACTATCTTCTCGCTTTATGTTAGCGTGCTATGTGGATGGTGTACCATGTGTGTGTGA | 303 | 47.19 | MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSGSLWDVDGAEGEAVDVDVVVSHVTIFSLYVSVLCGWCTMCV | 100 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g01101 | 100 | Gene3D | - | 1 | 84 | - | - | |
| Chna2g01101 | 100 | PANTHER | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 1 | 59 | IPR027141 | GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER) | |
| Chna2g01101 | 100 | SMART | Sm3 | 5 | 87 | IPR001163 | - | |
| Chna2g01101 | 100 | Pfam | LSM domain | 5 | 57 | IPR001163 | - | |
| Chna2g01101 | 100 | ProSiteProfiles | Sm domain profile. | 2 | 61 | IPR047575 | GO:0003723(InterPro) | |
| Chna2g01101 | 100 | SUPERFAMILY | Sm-like ribonucleoproteins | 1 | 58 | IPR010920 | - | |
| Chna2g01101 | 100 | FunFam | Small nuclear ribonucleoprotein Sm D1 | 1 | 66 | - | - | |
| Chna2g01101 | 100 | CDD | Sm-D1 | 2 | 59 | IPR034102 | GO:0000387(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g01101 | K11087 | small nuclear ribonucleoprotein D1 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chna | Chna-Chr2:87468296 | Chna6g01923 | Chna-Chr6:125680611 | dispersed |