AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g01136 ATGGCAGATACAGAAACGTTTGCTTTCCAAGCCGAGATCAACCAGCTTTTGAGTTTGATTATCAACACCTTCTACAGTAACAAGGAGATCTTCCTTCGTGAACTTGTTAGCAATGCTTCCGATGCTCTTGATAAGATCCGTTTTGAGAGCTTGACTGATAAGAGCAAGCTTGATGGTCAACCAGAGCTGTTCATCCATATTATTCCTGATAAGACCAACAACACATTGACCATCATCGACAGTGGAGTTGGGATGACCAAAGCTGATTTGGTGAATAATTTGGGAACCATTGCTCGATCTGGTACCAAAGAATTCATGGAAGCTATTGCTGCTGGTGCTGATGTCAGTATGATTGGACAATTTGGTGTTGGGTTCTACTCAGCTTACTTGGTTGCTGATAAAGTTGTTGTCACCACAAAGCACAATGACGATGAGCAGTATATCTGGGAGTCGCAAGCTGGTGGTTCGTTCACAGTTACCCATGATCAAGGTGAGCCACTTGGCAGAGGCACAAAAATCACTCTATACCTCAAGGAAGACCAACTCGAGTACCTCGAGGAGCGCAGACTTAAGGATTTGATCAAGAAGCATTCTGAGTTCATCAGTTACCCAATCTCTCTTTGGGTTGAGAAGACAATTGAGAAGGAAATATCTGATGACGAGGATGAGGAAGAGAAGAAAGACGAGGAAGGGAAGGTTGAAGAGGTTGATGAAGAGAAGGAAAAGGAAGAGAAGAAAAAGAAGACAATCAAGGAAGTGTCAAACGAGTGGTCATTGATGAACAAGCAAAAACCCATCTGGATGAGGAAACCAGAAGAGATCAGTAAGGAAGAGTATGCGGCTTTTTACAAGAGTCTCACTAATGATTGGGAGGAACACTTGAACGTGAAGCACTTCTCAGTTGAAGGACAGTTGGAATTCAAAGCTGTTCTCTTTGTCCCCAAAAGAGCCCCCTTTGACTTGTTCGACTCAAAGAAGAAGCAAAACAACATCAAGCTTTATGTCCGCCGTGTCTTTATCATGGACAACTGTGAGGACATCATCCCTGAATATCTCAGTTTTGTCAAAGGTATTGTGGATTCAGAAGATCTTCCACTTAACATCTCAAGAGAAATGTTGCAGCAGAACAAGATCCTCAAAGTTATCCGCAAGAATTTGGTGAAGAAGTGCATTGAACTTTTCCAAGAAATTGCTGAAAACAAGGAAGATTACACCAAGTTTTATGAAGCTTTTTCAAAGAACCTCAAGCTTGGTATCAACGAGGATTCCACAAACAGAACCAAACTTGCTGATTTACTTCGATACCACTCCACCAAAAGTGGCGATGAGATGACTAGTTTGAAGGACTATGTCACAAGGATGAAAGATGGTCAAAACGAAATCTTCTACATTACTGGTGAGAGCAAGAAATCTGTCGAGAATTCCCCGTTCCTTGAAAAGTTGAAGAAGAAGGGATATGAGGTTCTTTACATGGTTGATGCTATTGATGAGTATGCTGTGGGTCAGTTGAAGGAGTTTGAAGGTAAGAAGCTTGTTTCCGCTACCAAGGAAGGTTTGAAGCTTGAGGAAACCGAAGATGAGAAGCTAAAACAAGAATCTTTGAAGGAAAAGTTTGAGGGTTTGTGTAAGGTGATCAAGGATGTGTTGGGTGACAAAGTTGAGAAGGTTATTGTATCTGACCGTGTGGTCGATTCACCTTGCTGTTTGGTGACTGGTGAGTATGGGTGGACTGCCAACATGGAAAGAATCATGAAGGCACAAGCTTTGAGAGATGCCAGCATGGCAGGCTACATGTCCAGCAAGAAAACCATGGAGATCAACCCTGAGAATTCCATTATGGAGGAGTTGAGGAAGAGGGCTGATGCAGACAAGAATGACAAATCCGTCAAGGATTTGGTGCTGTTGCTGTTCGAGACTGCTTTGTTGACTTCTGGTTTTAGTCTTGATGAGCCTAACACTTTTGGCAACAGGATTCATAGGATGTTGAAGCTTGGGCTGAGCATTGATGATGATGCAGGTGAAGGTGATGCTGACATTCCTGCTCTTGAGGAAGCTGACATTGATGCCGAGGGCAGCAAGATGGAGGAAGTCGACTAA 2097 42.97 MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDGQPELFIHIIPDKTNNTLTIIDSGVGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVADKVVVTTKHNDDEQYIWESQAGGSFTVTHDQGEPLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKTIKEVSNEWSLMNKQKPIWMRKPEEISKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKQNNIKLYVRRVFIMDNCEDIIPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCIELFQEIAENKEDYTKFYEAFSKNLKLGINEDSTNRTKLADLLRYHSTKSGDEMTSLKDYVTRMKDGQNEIFYITGESKKSVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLEETEDEKLKQESLKEKFEGLCKVIKDVLGDKVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENSIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDDDAGEGDADIPALEEADIDAEGSKMEEVD 698
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g01136 698 FunFam Heat shock cognate protein 2 227 - -
Chna2g01136 698 Coils Coil 521 541 - -
Chna2g01136 698 PIRSF HSP90-HTPG 1 698 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Chna2g01136 698 Gene3D - 1 225 IPR036890 -
Chna2g01136 698 MobiDBLite consensus disorder prediction 218 247 - -
Chna2g01136 698 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 29 180 IPR003594 -
Chna2g01136 698 SUPERFAMILY HSP90 C-terminal domain 541 662 IPR037196 -
Chna2g01136 698 FunFam Heat shock protein 90 alpha 517 667 - -
Chna2g01136 698 FunFam Heat shock protein 90 alpha 261 429 - -
Chna2g01136 698 MobiDBLite consensus disorder prediction 218 237 - -
Chna2g01136 698 Hamap Chaperone protein HtpG [htpG]. 2 663 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Chna2g01136 698 ProSitePatterns Heat shock hsp90 proteins family signature. 25 34 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Chna2g01136 698 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 3 671 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(PANTHER)|GO:0051082(InterPro)|GO:0140662(InterPro)
Chna2g01136 698 SMART HKATPase-4 27 181 IPR003594 -
Chna2g01136 698 Coils Coil 219 256 - -
Chna2g01136 698 MobiDBLite consensus disorder prediction 675 698 - -
Chna2g01136 698 Gene3D - 261 429 - -
Chna2g01136 698 Gene3D - 517 666 IPR037196 -
Chna2g01136 698 CDD HATPase-Hsp90-like 14 201 IPR020575 -
Chna2g01136 698 Pfam Hsp90 protein 183 677 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 26 48 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 118 140 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 5 25 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 93 110 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 169 186 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 75 92 IPR020575 -
Chna2g01136 698 PRINTS 90kDa heat shock protein signature 187 205 IPR020575 -
Chna2g01136 698 SUPERFAMILY Ribosomal protein S5 domain 2-like 262 517 IPR020568 -
Chna2g01136 698 Gene3D - 430 516 - -
Chna2g01136 698 FunFam Heat shock protein 90 alpha 430 516 - -
Chna2g01136 698 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 5 211 IPR036890 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g01136 K04079 molecular chaperone HtpG
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Event-related genes

Select Gene_1 Gene_2 Event_name
58690 Chna2g01136 Chna5g00257
58691 Chna2g01136 Chna6g04043
58692 Chna2g01136 Chna6g04044
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:92241132 Chna6g04044 Chna-Chr6:338686791 dispersed
Chna Chna-Chr2:92241132 Chna6g04043 Chna-Chr6:338639525 transposed