AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chna2g01180 | ATGTGGGCTGATGCGGGTAAACATCTAGAGCTCGAGAAGCGTGTTAGAATTTTTGGTTACAATTATCCAACATTAATAGCATCGAACATCAACAGGGATGCAGATGCCCGCTGCTTTGCGGGACACGCTCGGCCAACCATTGATATTGCTACAGAACATGTAGCAGCTGCAGGTACGTGGGTATCTGGATTTGCGAATGTATGTGTTTCGGGTTTACGTCGTCCCTCGGATGTGGATACTGGTATAGCCAGCGAAATGCCTTCAGCTACCTGTCTTGCGGCTGAGCCTGCATTTCTATTTTTCACAAGGGTTTTGGCAGCTAACTCCATGATCTCCAATGAGGCCATTGCTGTTATTCAAAGGGCAAATAACATAAGCTACAAAGTGGTATTGGTTAATATGGTTGTTGAAGACATTTGGAATATGAAGATGGAGGCATATCTTGCTACGTTAGATGATGACGAGGAAGCTATTCAAGACATCATATCAAACTACTCTTTTTATGATGAGTTTGATGAACCTGTTTCATTTATAGAGTTGCCTATACGATGGAGTAACGGAGAGAGCTCGTACGACAACAAACACCGGATTTATCTAAAGGGAACAATCGATTATGGTCTTCAAAGGTTGCATAAGCAAGTGAAGGCATGGAAGTATGAGTGTTTGAAAGAGAAGCCTGAGATATCAGTGCTTTTGAAAGATAACATTTGGATCAAGCTTCAAAAACCTAGAAAGAGTTACGAAGATGTGATACGGACGATTTTGATCACGGTACATTGTCTTCATTTCTGTAAGGGAAGATCTCAAGCATCTAGTTCATCTCTTTGGAACTATCTACATGAAATTTTCAGTTTGTATGACGTCAGGCCTTCAGAGGATGATCTGATACACCATCTTTACTTCATTGCAGAAGCCGTGAAAAGGGACAAAACCTTACAAAAATCCAAGTTCTTGGCTTCATTCTTGGAGGGGAAACGCAGAAAGAAAAAAGCGTTTGATCAGAATGATGAAACTATATTTAAGCCGAGTTTTATAGTAGATGATGCGAAAGATGAATATGACACTTATGAAGTCACCACAAAAGAATCTAAAGACAACCAATCTGTGGATGAAGATGACAATGAATATGAGGATGAAGATTACAACGAATCTGAGAGCGAGGATGACAACAAATCTGAGGATGAAGATGACAACGAATCTGAGGATGGAGATGACAATAAGGGTGTTTGTGCAATATGTGATAATGGCGGTGATCTTACCTGTTGTGACGGGAAGTGTTTGAGGTCGTTTCATGCAACCGTAGAATCTGCAGAAGCAGCAGAATCCAAATGCATATCACTGTGTCTACCTGCTCAAAAAGGACTTCAGTCATTTGTTTGCTTGAACTGTACTCATGAACAACACCAGTGCTTCGCTTGCGGAGAATTAGGATCTTCCAATGAATCTTCCGGTGCAGAGGTTTTTCGCTGTAGTTCTGAAACTTGTGGCCATTTCTACCACCCAAAATGTGTTGCAAAGTTAATTCAGGATGAAAGTGACACCAGGGCACAATTTCTTGAAGAAAAAATTGCTGGTGGTAAGTCGTTCATATGTCCTGTTCACAAATGCCATAAATGTAAACAGGAAGAAAACGAGAAGGTGAGAGGCTTGCAATTTGCTATTTGCAGGCGATGTCCAACGTCATACCACAGGAAATGCTTGCCAAGAAACATTGTATTTGATAACAAAGATGATGATGAGTTTGTTGTAGCTAGAGCGTGGAATGACCTTTTACCTAAATCGCGTGCATTGATATTTTGCTTAAAACATGAGATAGATCTTGAACTTCACACTCCAGTTAGAAATATAAAATTTCCAGACATTGGCCATACCAAGAAGAAAGTATCAATCAATGAGGAAGTATCGTATTCAAATTGCATATCTAGTGAGATAAGAGTTGAAAAGGCGCCTTCATCTGTTAGACCAGTAGATATCTCCAGAAAGAGATTCATTACATTATGCGGGCCAGATCCAATGAAGAAACAAAGATTAACCGACTATGAGAAGCCCTTAAAGAAGTTTGTTCCAGTGCGGTCCTTTGGTCACAGTTCTACAGTAGTGGAAAACTGGAAGAACAGCAACATTGCTGTTGCTCAGCAGCATGGCCATATTTCTAAAGTACAAGAACCGCTACTCTCTGAAAACGTTGAGGCCATTGACTTGCAAGTGGAAAACCCTAAGATCGTTAGTGAAAAGGGGACCAGTCAAACCATAGAAAAAGCTGAAAACCTGAAGAGTAGCAAACACATTGCTATTGCTCAGCAGCATGGCCATATTTCCACAGTACAAGGACCACTACTCTCTGATGGACATGTCGAAGCCTTTGATTTGCCACTAGAAAACCGTGAGATCGTTAGTGAAAAGAACACCAGTCAAACCACAGAAAAAGTTGAAAACTGTAAGAGTAGCAAGTTCATTGCTGTTGCTCAGAAACAAGGCCCTATTTCCAAAGTACAAGAACCGCTACCATCTGAAAATGTTGAGGTCTTTGATTTGCCAGTGAAAAACCATGAGGTCGTTGGTGAAAAGGACACTAGGCGAAAAACAGAAGTGGAAAACCGGAAGAGTAGCAAATATATTGCTATTGTTCAGCAGCATGGCCATACATTGAAAGTACAAGAGCCACCACTCTCTGATGAAAATGTTGAGGCCTTTGATTTGCCAGTGGAAAACCGTGAGAGCGTTAGTGAAAAGGATACCACTAGTCAAACAACAGAAGAGATGGAAACCCGGGTTTCGAAAGAACTGCCAATCTCTGATAGGTACATTCATCTTCCTAATTCGCCAGTGAAAATTTGTAAATCAAATGGTGAAAAGAACACTGGTCAAACTACAAAAAAAAGGGAAAACCGGAATAGTCGCAAACGCAGGAGGAGAAGCAAGCGCATTGCTATTACCCAGCAGAATGCCCATATTTCCAAAATACAAGAACTGACAATCCCTGATAAATTTGTTCATCCCTTTAATTCGCAAGTGAAAAACTGCGACTTAAATGTTGAAAAGGATGTTAGTCAAACCAAAGCAAAAGCAGCAGCAGCAACCAGTCTGATCAGAAGTCAGAAAGAAAGTTCACGATGTGATAGATCTAATTCACACAACAACATTGCTACAAGGGATGCAAGTGCAACAGACGCGCAGCCATATCACAAAAGCAGAATACTTAACGATGATGTCCACTTTCGTGGATACGAAAGAGAAAACGGCTATCATAACAAGCGTGGCTATATTAGGGAGGCTTATGACGAGTATCGTGACAGACGTGGTTATAGCAGCGAGGCTAATAACGAGTATTATGATAGATGTCATCATCATGACAGGATTAGTACACCTGCAATACAACGATATACACCCAAACTGGATGAGGGAAACCACAAATGGATGGAGAAGAGGCGCACGTGGTTGTATGACTATGATCATCACCGTCGTGGATGTGACCCACATATGTATGCTAATGGCTTTGCCTCTGGGCCGTTTCCACACGGACCACACCTCAACTCATCTTGCAGCCGGATCGATGAGAGAATGTATTACTGA | 3573 | 41.37 | MWADAGKHLELEKRVRIFGYNYPTLIASNINRDADARCFAGHARPTIDIATEHVAAAGTWVSGFANVCVSGLRRPSDVDTGIASEMPSATCLAAEPAFLFFTRVLAANSMISNEAIAVIQRANNISYKVVLVNMVVEDIWNMKMEAYLATLDDDEEAIQDIISNYSFYDEFDEPVSFIELPIRWSNGESSYDNKHRIYLKGTIDYGLQRLHKQVKAWKYECLKEKPEISVLLKDNIWIKLQKPRKSYEDVIRTILITVHCLHFCKGRSQASSSSLWNYLHEIFSLYDVRPSEDDLIHHLYFIAEAVKRDKTLQKSKFLASFLEGKRRKKKAFDQNDETIFKPSFIVDDAKDEYDTYEVTTKESKDNQSVDEDDNEYEDEDYNESESEDDNKSEDEDDNESEDGDDNKGVCAICDNGGDLTCCDGKCLRSFHATVESAEAAESKCISLCLPAQKGLQSFVCLNCTHEQHQCFACGELGSSNESSGAEVFRCSSETCGHFYHPKCVAKLIQDESDTRAQFLEEKIAGGKSFICPVHKCHKCKQEENEKVRGLQFAICRRCPTSYHRKCLPRNIVFDNKDDDEFVVARAWNDLLPKSRALIFCLKHEIDLELHTPVRNIKFPDIGHTKKKVSINEEVSYSNCISSEIRVEKAPSSVRPVDISRKRFITLCGPDPMKKQRLTDYEKPLKKFVPVRSFGHSSTVVENWKNSNIAVAQQHGHISKVQEPLLSENVEAIDLQVENPKIVSEKGTSQTIEKAENLKSSKHIAIAQQHGHISTVQGPLLSDGHVEAFDLPLENREIVSEKNTSQTTEKVENCKSSKFIAVAQKQGPISKVQEPLPSENVEVFDLPVKNHEVVGEKDTRRKTEVENRKSSKYIAIVQQHGHTLKVQEPPLSDENVEAFDLPVENRESVSEKDTTSQTTEEMETRVSKELPISDRYIHLPNSPVKICKSNGEKNTGQTTKKRENRNSRKRRRRSKRIAITQQNAHISKIQELTIPDKFVHPFNSQVKNCDLNVEKDVSQTKAKAAAATSLIRSQKESSRCDRSNSHNNIATRDASATDAQPYHKSRILNDDVHFRGYERENGYHNKRGYIREAYDEYRDRRGYSSEANNEYYDRCHHHDRISTPAIQRYTPKLDEGNHKWMEKRRTWLYDYDHHRRGCDPHMYANGFASGPFPHGPHLNSSCSRIDERMYY | 1190 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chna2g01180 | 1190 | SMART | PHD-3 | 469 | 535 | IPR001965 | - | |
| Chna2g01180 | 1190 | SMART | PHD-3 | 536 | 604 | IPR001965 | - | |
| Chna2g01180 | 1190 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 404 | 465 | IPR013083 | - | |
| Chna2g01180 | 1190 | PANTHER | PHD FINGER-CONTAINING PROTEIN DDB-G0268158 | 150 | 860 | - | - | |
| Chna2g01180 | 1190 | MobiDBLite | consensus disorder prediction | 902 | 931 | - | - | |
| Chna2g01180 | 1190 | MobiDBLite | consensus disorder prediction | 369 | 403 | - | - | |
| Chna2g01180 | 1190 | Pfam | Histone-lysine N-methyltransferase NSD-like, PHD zinc finger | 466 | 534 | - | - | |
| Chna2g01180 | 1190 | CDD | PHD3-NSD | 536 | 576 | - | - | |
| Chna2g01180 | 1190 | CDD | PHD2-NSD | 469 | 534 | - | - | |
| Chna2g01180 | 1190 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 466 | 586 | IPR013083 | - | |
| Chna2g01180 | 1190 | MobiDBLite | consensus disorder prediction | 1027 | 1063 | - | - | |
| Chna2g01180 | 1190 | Pfam | Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger | 536 | 573 | - | - | |
| Chna2g01180 | 1190 | Pfam | Cytosine specific DNA methyltransferase replication foci domain | 155 | 283 | IPR022702 | - | |
| Chna2g01180 | 1190 | MobiDBLite | consensus disorder prediction | 357 | 404 | - | - | |
| Chna2g01180 | 1190 | MobiDBLite | consensus disorder prediction | 902 | 974 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chna2g01180 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 58708 | Chna2g01180 | Chna6g03949 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chna | Chna-Chr2:96033895 | Chna5g01056 | Chna-Chr5:51355162 | dispersed | |
| Chna | Chna-Chr2:96033895 | Chna6g03949 | Chna-Chr6:334323350 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Chna7g02525 | . | 525 | 773 | PHD Transcription Factor family | AT5G58610 | 36.502 | 3.77e-41 | 155.0 | |
| Chna00001175g00227 | . | 690 | 975 | PHD Transcription Factor family | AT5G58610 | 46.154 | 6.85e-82 | 278.0 | |
| Chna5g02737 | ACH | 531 | 973 | PHD Transcription Factor family | AT2G36720 | 41.333 | 4.60e-109 | 347.0 | |
| Chna5g03016 | . | 520 | 985 | PHD Transcription Factor family | AT2G36720 | 40.34 | 1.47e-105 | 335.0 | |
| Chna7g03184 | ACH | 683 | 929 | PHD Transcription Factor family | AT3G14980 | 56.048 | 7.90e-87 | 298.0 | |
| Chna5g01401 | . | 1546 | 1704 | PHD Transcription Factor family | AT5G35210 | 28.655 | 4.19e-12 | 67.4 | |
| Chna7g02524 | . | 805 | 963 | PHD Transcription Factor family | AT5G58610 | 50.314 | 3.42e-47 | 162.0 | |
| Chna2g02674 | ACH | 26 | 974 | PHD Transcription Factor family | AT5G58610 | 37.016 | 0.0 | 621.0 | |
| Chna00038675g00045 | . | 611 | 656 | PHD Transcription Factor family | AT5G12400 | 39.583 | 9.83e-06 | 47.0 | |
| Chna5g03220 | . | 615 | 661 | PHD Transcription Factor family | AT5G22260 | 44.681 | 1.64e-06 | 50.1 | |
| Chna3g00976 | . | 184 | 1536 | PHD Transcription Factor family | AT5G35210 | 41.46 | 0.0 | 1035.0 | |
| Chna7g02183 | . | 365 | 975 | PHD Transcription Factor family | AT5G58610 | 34.312 | 1.17e-96 | 318.0 | |
| Chna4g02322 | . | 614 | 640 | PHD Transcription Factor family | AT5G22260 | 59.259 | 2.05e-06 | 46.6 | |
| Chna3g01342 | . | 253 | 977 | PHD Transcription Factor family | AT2G36720 | 41.91 | 0.0 | 608.0 | |
| Chna00039178g00001 | . | 675 | 760 | PHD Transcription Factor family | AT4G14920 | 35.165 | 4.60e-07 | 52.8 | |
| Chna2g02122 | . | 45 | 597 | PHD Transcription Factor family | AT3G24440 | 48.511 | 2.78e-171 | 498.0 | |
| Chna3g03413 | . | 835 | 933 | PHD Transcription Factor family | AT3G14980 | 60.0 | 1.59e-33 | 121.0 | |
| Chna2g03486 | . | 311 | 925 | PHD Transcription Factor family | AT1G05380 | 43.526 | 3.59e-168 | 523.0 | |
| Chna5g03134 | . | 635 | 781 | PHD Transcription Factor family | AT3G14980 | 64.189 | 8.34e-64 | 217.0 | |
| Chna2g00552 | . | 611 | 654 | PHD Transcription Factor family | AT5G12400 | 41.304 | 3.68e-07 | 48.9 | |
| Chna4g00865 | . | 611 | 656 | PHD Transcription Factor family | AT5G12400 | 46.939 | 7.64e-08 | 53.9 | |
| Chna1g00990 | . | 130 | 247 | PHD Transcription Factor family | AT5G57380 | 25.373 | 7.76e-10 | 61.2 | |
| Chna5g04365 | . | 844 | 895 | PHD Transcription Factor family | AT1G05380 | 76.923 | 1.73e-23 | 93.2 | |
| Chna2g01180 | ACH | 718 | 818 | PHD Transcription Factor family | AT3G14980 | 32.812 | 2.17e-07 | 53.5 | |
| Chna00040116g00003 | . | 718 | 883 | PHD Transcription Factor family | AT1G05380 | 66.867 | 1.42e-71 | 243.0 | |
| Chna6g02398 | . | 841 | 901 | PHD Transcription Factor family | AT5G36670 | 60.656 | 3.52e-21 | 84.0 | |
| Chna5g00761 | ACH | 566 | 1027 | PHD Transcription Factor family | AT3G14980 | 56.129 | 1.32e-179 | 546.0 | |
| Chna6g00458 | . | 540 | 975 | PHD Transcription Factor family | AT5G58610 | 37.179 | 7.19e-87 | 291.0 | |
| Chna6g03952 | . | 720 | 807 | PHD Transcription Factor family | AT3G14980 | 31.25 | 1.48e-06 | 47.8 | |
| Chna9g02538 | . | 841 | 901 | PHD Transcription Factor family | AT5G36670 | 62.295 | 2.30e-23 | 90.1 | |
| Chna8g00299 | . | 309 | 1595 | PHD Transcription Factor family | AT5G12400 | 40.166 | 0.0 | 885.0 | |
| Chna9g02255 | ACH | 675 | 760 | PHD Transcription Factor family | AT4G14920 | 36.264 | 4.50e-08 | 56.2 | |
| Chna1g01963 | . | 172 | 301 | PHD Transcription Factor family | AT3G53680 | 46.154 | 2.08e-28 | 114.0 | |
| Chna2g00702 | ACH | 541 | 1023 | PHD Transcription Factor family | AT3G14980 | 52.789 | 5.08e-174 | 537.0 | |
| Chna5g04907 | . | 1542 | 1706 | PHD Transcription Factor family | AT5G35210 | 85.455 | 1.90e-86 | 290.0 | |
| Chna1g02324 | . | 367 | 997 | PHD Transcription Factor family | AT4G14920 | 40.729 | 3.94e-160 | 509.0 | |
| Chna7g03116 | ACH | 7 | 1032 | PHD Transcription Factor family | AT3G14980 | 42.022 | 0.0 | 762.0 | |
| Chna00007322g00003 | . | 718 | 883 | PHD Transcription Factor family | AT1G05380 | 66.867 | 1.42e-71 | 243.0 | |
| Chna00040001g00014 | . | 636 | 672 | PHD Transcription Factor family | AT5G36670 | 59.459 | 2.67e-08 | 49.7 | |
| Chna6g00485 | . | 261 | 973 | PHD Transcription Factor family | AT2G36720 | 46.841 | 0.0 | 655.0 | |
| Chna7g01176 | . | 145 | 261 | PHD Transcription Factor family | AT5G57380 | 31.783 | 4.41e-09 | 57.0 | |
| Chna00039015g00033 | . | 611 | 656 | PHD Transcription Factor family | AT5G12400 | 39.583 | 9.83e-06 | 47.0 | |
| Chna6g01079 | . | 685 | 753 | PHD Transcription Factor family | AT4G14920 | 37.838 | 6.83e-07 | 52.4 | |
| Chna7g01801 | ACH | 554 | 973 | PHD Transcription Factor family | AT5G58610 | 44.643 | 2.52e-122 | 395.0 | |
| Chna5g04826 | . | 1582 | 1706 | PHD Transcription Factor family | AT5G35210 | 82.4 | 3.69e-70 | 226.0 | |
| Chna6g03949 | ACH | 720 | 801 | PHD Transcription Factor family | AT3G14980 | 33.036 | 2.95e-08 | 56.6 | |
| Chna00000852g00010 | . | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 30.097 | 4.53e-08 | 54.3 | |
| Chna7g02478 | . | 223 | 984 | PHD Transcription Factor family | AT4G14920 | 48.774 | 0.0 | 706.0 | |
| Chna7g01625 | . | 29 | 167 | PHD Transcription Factor family | AT5G58610 | 26.619 | 3.69e-08 | 48.9 | |
| Chna00007061g00002 | . | 81 | 663 | PHD Transcription Factor family | AT5G22260 | 29.564 | 1.15e-74 | 253.0 | |
| Chna6g02157 | . | 15 | 407 | PHD Transcription Factor family | AT5G22260 | 30.969 | 1.18e-56 | 203.0 | |
| Chna3g01205 | ACH | 172 | 300 | PHD Transcription Factor family | AT3G53680 | 54.264 | 1.64e-40 | 154.0 | |
| Chna00039494g00007 | . | 554 | 973 | PHD Transcription Factor family | AT5G58610 | 44.866 | 3.29e-123 | 398.0 | |
| Chna2g01116 | . | 130 | 247 | PHD Transcription Factor family | AT5G57380 | 25.373 | 8.17e-10 | 61.2 | |
| Chna00038858g00004 | . | 27 | 160 | PHD Transcription Factor family | AT5G58610 | 27.536 | 1.53e-09 | 57.0 | |
| Chna00038134g00041 | . | 130 | 217 | PHD Transcription Factor family | AT5G57380 | 30.097 | 4.07e-08 | 54.3 | |
| Chna7g01190 | . | 221 | 996 | PHD Transcription Factor family | AT4G14920 | 46.442 | 0.0 | 685.0 | |
| Chna7g00943 | . | 226 | 685 | PHD Transcription Factor family | AT4G30200 | 37.844 | 5.75e-91 | 286.0 | |
| Chna5g02297 | . | 320 | 404 | PHD Transcription Factor family | AT5G22260 | 40.0 | 2.25e-06 | 49.7 | |
| Chna3g02512 | . | 81 | 663 | PHD Transcription Factor family | AT5G22260 | 31.006 | 1.01e-83 | 277.0 | |
| Chna6g00460 | . | 540 | 963 | PHD Transcription Factor family | AT5G58610 | 37.5 | 1.37e-87 | 293.0 | |
| Chna4g01357 | ACH | 684 | 760 | PHD Transcription Factor family | AT4G14920 | 35.366 | 1.55e-07 | 54.3 | |
| Chna3g02826 | . | 498 | 925 | PHD Transcription Factor family | AT1G05380 | 32.874 | 2.52e-74 | 251.0 | |
| Chna9g01948 | ACH | 41 | 831 | PHD Transcription Factor family | AT3G53680 | 52.174 | 0.0 | 790.0 | |
| Chna4g02502 | . | 1 | 504 | PHD Transcription Factor family | AT2G18880 | 35.514 | 9.46e-90 | 284.0 | |
| Chna2g02570 | . | 3 | 317 | PHD Transcription Factor family | AT4G30200 | 52.681 | 3.98e-101 | 317.0 | |
| Chna8g01642 | . | 616 | 663 | PHD Transcription Factor family | AT2G36720 | 41.509 | 7.88e-06 | 48.5 |