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AGRP

Asteraceae Genomic Research Platform

AGRP Search

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Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g01734 ATGCCTTCGAAACAAGGAGAAGCTTTTCGTCCCTTCCGCAGCATGGCTCCAAGTGTTTGGGGAGATAAGTTTCTCATTTACGATAAGGATATAGAGCATGGTGAGGTAGCACAAATAATCGATAACTTGAAAGAGAAAGTGAGGAAAGATATAGAAGCTGCTTTAGGTGATCCAAGAGAACATACGAGTTTGATAAGATTAATAGATGCAATCCAACGTCTTGGCATATCCTATTACTTTGAAGAAGAGATTAAAAATGCTTTGCAGCATGTTTATGAAGTATACGGTGATGACTGGAATGGCGGAAGCTCTTCCATTTGGTTTCGACTCCTACGACAACAAGGCTTCTATGTATCATGTGATGTCTTTAATAAGTATAAGGACGAACATGGAGCTTTTAAGGAATCCTTAGTGAAAGATGTCGAAGAAATGCTTGAGCTGTATGAAGCAACATATATGAAGGTAAAAGGCGAAGTTTTACTAGACGAAGCACTTCTGTTTACAAGAACTCATCTTGATAACATATCAAAGGATCCTCTTCGTTGCGACTCTACCTTATCTACACATATACAAGAGGCACTAGTGACACCTATTCGTAGAAGGTTGCCAAGACTAGAGGCACTGCGCTACATTCGTTTCTACCAGCAACAAGCTTCTCATGATGAGTCTTTACTTAAGCTTGCAAAGTTAGAGTTCAATTTGCTTCAGTCGATATACAAGAGTGAACTTAGCCAAGTTTCCAAGTGGTGGAAGGGTGTTGATGTCCCGCACAATCTACCTTATGTAAGAGACAGAATTGTTGAGAGCTTTTTTTGGGCTTTTGGTCTATACTCTGAGCCACACCATTCTCTTGCTAGAATATTCCTAGCAAAAGTTATTCAAATGATGACTACTCTTGATGATACTTATGATGCGTACGGTACTTATGAAGAACTTGTAATCTTTACAGAAGCAGCTCAAAGGTGGAGTATCACATGCTTAGATGAGCTTCCAGATTACATGAAACTGGTATACCGGGTTTTAATCGAGATGTACCAAGAAATGGAAGAAATTATGGCAAAAGAAGAAAAAACACCTCTTTTTAACTGTGCTAAAGAGTTTATGAAGGAATTTATTAGAGGCTACATGTTAGAAGCAAAATGGGTACATGAGGGGCACACACCAACAGCAGAAGAGCATGGGTCAATTGCATTCGTGACCGGTGGTGGTAGCTTGATGATAACGTCATGTCTTGTAGGCATGGGTGATATGATCACAAACAAGTCGATCGAATGGGCTCTCACTGAACCTCCTATTTTCAAAGCTTCATCTGCAATTGGTAGACTCATAAATGATGTTGCCACTTACAAGACGGAGCAAGAAAGAGATCATTTTCCAACTAGTGTTGAATGTTACATGAAGCAATATGGTGTCACAGAGGAGCATGCATGTGACATGGTACGCAAACAGATAGAAGATCTGTGGAAAGATATAAATCGCGAGTCACTCATGTGTAAAGATGTTCCAATGCCTATAATAATGGTAGTGATCAACTTGATACGAACATTGGACTATGTTTACAAATATAAAGATAGTTTCACAGAAGGGGGAGAAGAACTCAAAGATCTTATCAAGTCTTTGTTCATTCATCCTATGAGTATATGA 1644 39.23 MPSKQGEAFRPFRSMAPSVWGDKFLIYDKDIEHGEVAQIIDNLKEKVRKDIEAALGDPREHTSLIRLIDAIQRLGISYYFEEEIKNALQHVYEVYGDDWNGGSSSIWFRLLRQQGFYVSCDVFNKYKDEHGAFKESLVKDVEEMLELYEATYMKVKGEVLLDEALLFTRTHLDNISKDPLRCDSTLSTHIQEALVTPIRRRLPRLEALRYIRFYQQQASHDESLLKLAKLEFNLLQSIYKSELSQVSKWWKGVDVPHNLPYVRDRIVESFFWAFGLYSEPHHSLARIFLAKVIQMMTTLDDTYDAYGTYEELVIFTEAAQRWSITCLDELPDYMKLVYRVLIEMYQEMEEIMAKEEKTPLFNCAKEFMKEFIRGYMLEAKWVHEGHTPTAEEHGSIAFVTGGGSLMITSCLVGMGDMITNKSIEWALTEPPIFKASSAIGRLINDVATYKTEQERDHFPTSVECYMKQYGVTEEHACDMVRKQIEDLWKDINRESLMCKDVPMPIIMVVINLIRTLDYVYKYKDSFTEGGEELKDLIKSLFIHPMSI 547
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g01734 547 Pfam Terpene synthase, N-terminal domain 19 194 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Chna2g01734 547 Pfam Terpene synthase family, metal binding domain 253 490 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Chna2g01734 547 SFLD Isoprenoid Synthase Type I 222 546 - -
Chna2g01734 547 Gene3D - 59 220 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Chna2g01734 547 FunFam Isoprene synthase, chloroplastic 206 535 - -
Chna2g01734 547 CDD Terpene-cyclase-plant-C1 10 544 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Chna2g01734 547 PANTHER OS04G0344100 PROTEIN-RELATED 16 537 - -
Chna2g01734 547 FunFam Isoprene synthase, chloroplastic 59 220 - -
Chna2g01734 547 Coils Coil 138 158 - -
Chna2g01734 547 Gene3D Farnesyl Diphosphate Synthase 17 535 IPR008949 -
Chna2g01734 547 SFLD Terpene Cyclase Like 1 C Terminal Domain 222 546 IPR034741 -
Chna2g01734 547 SUPERFAMILY Terpenoid synthases 220 545 IPR008949 -
Chna2g01734 547 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 17 220 IPR008930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g01734 K15803 (-)-germacrene D synthase [EC:4.2.3.75]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:54419599 Chna2g01734 Chna-Chr2:156407479 dispersed
Chna Chna-Chr2:156407479 Chna4g00804 Chna-Chr4:38469233 dispersed
Chna Chna-Chr2:156407479 Chna3g03216 Chna-Chr3:237796955 transposed
Chna Chna-Chr2:156407479 Chna3g03172 Chna-Chr3:234685582 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chna3g00106 . 14 562 TPS gene family AT4G16740 41.105 6.97e-145 429.0
Chna1g00868 . 1 408 TPS gene family AT5G23960 38.929 1.12e-90 283.0
Chna6g02515 . 262 315 TPS gene family AT3G25820 51.786 4.56e-14 64.3
Chna00038769g00014 . 13 539 TPS gene family AT4G16730 32.264 4.68e-102 315.0
Chna1g02008 . 5 547 TPS gene family AT5G23960 33.272 3.53e-108 334.0
Chna5g03180 . 14 561 TPS gene family AT4G16740 40.142 5.37e-135 404.0
Chna00039044g00128 . 146 214 TPS gene family AT5G23960 36.232 5.84e-10 52.0
Chna00039193g00025 . 52 597 TPS gene family AT3G25810 35.971 2.42e-110 340.0
Chna00039193g00023 . 69 467 TPS gene family AT4G16740 40.05 3.22e-93 288.0
Chna7g00664 . 30 594 TPS gene family AT3G25820 35.951 6.20e-111 342.0
Chna2g01734 . 3 547 TPS gene family AT5G23960 35.688 1.10e-117 357.0
Chna7g00177 . 21 595 TPS gene family AT3G25810 41.146 1.94e-149 441.0
Chna2g01181 . 24 592 TPS gene family AT3G25820 42.857 2.16e-155 456.0
Chna3g00243 . 1 576 TPS gene family AT3G25810 39.866 6.10e-146 433.0
Chna5g01269 . 1 580 TPS gene family AT3G25820 43.412 8.21e-161 471.0
Chna5g04967 . 24 562 TPS gene family AT4G16740 45.917 7.54e-165 478.0
Chna7g00760 . 1 579 TPS gene family AT3G25810 39.899 1.12e-142 424.0
Chna8g02797 . 124 514 TPS gene family AT5G23960 35.696 2.15e-75 253.0
Chna6g01188 . 12 487 TPS gene family AT1G61120 41.564 4.21e-117 362.0
Chna00002107g00024 . 328 680 TPS gene family AT4G02780 40.51 3.08e-81 260.0
Chna9g02879 . 42 546 TPS gene family AT5G23960 38.856 8.89e-133 394.0
Chna3g04263 . 4 529 TPS gene family AT5G23960 37.64 1.16e-121 368.0
Chna3g00072 . 14 562 TPS gene family AT4G16740 41.768 4.38e-145 430.0
Chna00040262g00013 . 102 200 TPS gene family AT5G23960 44.554 1.69e-16 78.2
Chna00002107g00028 . 86 257 TPS gene family AT4G02780 46.857 3.30e-53 179.0
Chna2g03287 . 7 247 TPS gene family AT5G23960 38.683 8.53e-48 164.0
Chna2g00437 . 52 597 TPS gene family AT3G25810 31.655 3.68e-79 255.0
Chna5g01253 . 41 529 TPS gene family AT5G23960 37.98 1.40e-118 358.0
Chna5g04582 . 24 592 TPS gene family AT3G25820 43.826 2.74e-163 478.0
Chna1g01785 . 44 592 TPS gene family AT3G25820 35.461 5.22e-107 330.0
Chna8g03076 . 4 529 TPS gene family AT5G23960 37.523 5.38e-121 366.0
Chna5g05151 . 47 566 TPS gene family AT3G25820 44.914 2.43e-153 457.0
Chna6g02421 . 33 130 TPS gene family AT1G79460 63.265 1.35e-33 134.0
Chna8g03078 . 4 529 TPS gene family AT5G23960 37.64 1.79e-123 373.0
Chna8g02375 . 4 547 TPS gene family AT5G23960 36.643 8.00e-118 358.0
Chna6g03812 . 1 545 TPS gene family AT5G23960 36.232 5.56e-122 369.0
Chna8g01104 . 331 547 TPS gene family AT5G23960 34.703 1.07e-42 149.0
Chna9g03198 . 4 592 TPS gene family AT3G25820 41.723 1.58e-152 449.0
Chna2g00439 . 58 597 TPS gene family AT3G25810 39.709 2.21e-132 396.0
Chna4g00809 . 4 275 TPS gene family AT5G23960 34.892 1.71e-49 170.0
Chna4g01041 . 42 547 TPS gene family AT5G23960 34.559 2.86e-102 317.0
Chna8g02723 . 4 542 TPS gene family AT5G23960 35.949 3.07e-112 343.0
Chna8g02727 . 4 542 TPS gene family AT5G23960 33.029 2.68e-96 301.0
Chna00038806g00001 . 1 547 TPS gene family AT5G23960 37.75 8.29e-119 359.0
Chna3g00387 . 26 562 TPS gene family AT4G16740 42.727 2.54e-144 427.0
Chna00002107g00026 . 108 248 TPS gene family AT4G02780 36.806 4.56e-25 96.3
Chna2g03256 . 4 547 TPS gene family AT5G23960 34.177 1.22e-108 334.0
Chna1g01020 . 34 778 TPS gene family AT1G79460 55.228 0.0 822.0
Chna1g01019 . 6 778 TPS gene family AT1G79460 46.479 0.0 698.0
Chna4g01042 . 49 177 TPS gene family AT3G29410 34.351 6.11e-21 85.9
Chna00039193g00024 . 293 595 TPS gene family AT3G25810 43.564 6.78e-86 270.0
Chna00039590g00015 . 4 529 TPS gene family AT5G23960 36.21 5.18e-118 358.0
Chna5g01309 . 257 340 TPS gene family AT4G16730 42.857 7.99e-25 99.4
Chna5g00550 . 5 545 TPS gene family AT5G23960 32.734 2.75e-97 302.0
Chna5g04992 . 4 529 TPS gene family AT5G23960 37.64 1.16e-121 368.0
Chna7g03919 . 331 547 TPS gene family AT5G23960 34.703 1.45e-42 150.0
Chna8g02796 . 7 529 TPS gene family AT5G23960 35.46 2.93e-105 335.0
Chna7g01234 . 55 200 TPS gene family AT5G23960 37.748 1.00e-21 91.7
Chna5g04965 . 97 594 TPS gene family AT3G25820 40.837 7.43e-119 357.0
Chna3g00382 . 47 592 TPS gene family AT3G25820 42.23 5.89e-146 433.0
Chna00038769g00013 . 105 539 TPS gene family AT4G16730 32.648 8.74e-85 268.0
Chna8g03075 . 15 94 TPS gene family AT4G16740 35.556 1.78e-08 49.7
Chna00038769g00012 . 64 213 TPS gene family AT1G61680 37.419 9.60e-24 95.5
Chna5g05152 . 455 590 TPS gene family AT2G24210 49.265 1.49e-34 128.0
Chna8g02991 . 114 529 TPS gene family AT5G23960 39.234 1.15e-106 325.0
Chna3g00386 . 47 592 TPS gene family AT3G25820 42.048 3.40e-145 431.0
Chna3g03216 . 4 547 TPS gene family AT5G23960 32.914 1.71e-107 330.0
Chna5g01308 . 52 597 TPS gene family AT3G25810 39.892 3.48e-137 409.0
Chna5g05150 . 78 588 TPS gene family AT2G24210 34.783 3.88e-86 275.0
Chna8g02729 . 4 542 TPS gene family AT5G23960 32.907 1.98e-96 301.0
Chna2g02250 . 76 569 TPS gene family AT1G61680 42.376 8.17e-139 410.0
Chna3g00381 . 1 595 TPS gene family AT3G25810 39.539 9.54e-144 427.0
Chna8g02990 . 4 529 TPS gene family AT5G23960 38.274 9.69e-124 373.0
Chna8g02725 . 4 542 TPS gene family AT5G23960 35.949 1.59e-113 347.0
Chna8g02795 . 60 601 TPS gene family AT3G14490 34.426 5.80e-110 338.0
Chna8g02376 . 4 547 TPS gene family AT5G23960 36.964 1.23e-119 362.0
Chna3g00848 . 122 515 TPS gene family AT5G23960 36.591 3.51e-81 257.0
Chna1g01021 . 33 779 TPS gene family AT1G79460 54.339 0.0 804.0
Chna8g02798 . 304 604 TPS gene family AT3G14520 29.236 5.32e-49 174.0
Chna5g01310 . 331 594 TPS gene family AT3G25820 33.762 7.09e-56 194.0
Chna5g01718 . 4 529 TPS gene family AT5G23960 34.111 6.16e-106 327.0
Chna5g05146 . 80 592 TPS gene family AT3G25820 42.524 4.49e-141 417.0
Chna6g00533 . 253 674 TPS gene family AT4G02780 53.191 3.47e-157 464.0
Chna1g02009 . 41 318 TPS gene family AT5G23960 41.549 2.18e-65 216.0
Chna7g01124 . 29 221 TPS gene family AT2G24210 35.678 4.32e-30 115.0
Chna4g00804 . 4 547 TPS gene family AT5G23960 37.931 6.23e-130 388.0
Chna2g00416 . 22 592 TPS gene family AT3G25820 42.367 1.20e-150 445.0
Chna9g02350 . 7 547 TPS gene family AT5G23960 34.244 1.85e-112 343.0
Chna8g03077 . 4 529 TPS gene family AT5G23960 37.64 4.76e-123 372.0
Chna6g02418 . 33 130 TPS gene family AT1G79460 63.265 1.32e-33 134.0
Chna3g02754 . 352 493 TPS gene family AT1G70080 29.577 1.81e-22 90.5
Chna2g00714 . 3 547 TPS gene family AT5G23960 35.688 1.10e-117 357.0
Chna5g03805 . 92 544 TPS gene family AT4G02780 57.505 0.0 592.0
Chna2g01956 . 96 597 TPS gene family AT3G25810 37.965 4.49e-111 340.0
Chna3g00241 . 21 537 TPS gene family AT4G16730 40.344 5.02e-143 421.0
Chna2g03119 . 7 547 TPS gene family AT5G23960 34.576 3.53e-108 334.0
Chna4g01040 . 4 547 TPS gene family AT5G23960 38.294 5.01e-127 381.0
Chna8g02734 . 7 547 TPS gene family AT5G23960 34.964 2.86e-109 335.0
Chna4g02240 . 30 594 TPS gene family AT3G25820 37.565 1.24e-134 404.0
Chna4g00805 . 4 248 TPS gene family AT5G23960 34.661 8.33e-42 149.0
Chna5g04966 . 233 537 TPS gene family AT4G16730 45.574 6.55e-102 309.0
Chna3g00242 . 47 576 TPS gene family AT3G25810 42.617 9.91e-147 435.0
Chna1g02311 . 62 213 TPS gene family AT1G61680 35.032 4.00e-23 93.6
Chna1g02310 . 13 539 TPS gene family AT4G16730 32.453 1.90e-101 314.0
Chna2g00435 . 355 597 TPS gene family AT3G25810 37.86 3.01e-49 174.0
Chna5g01268 . 40 592 TPS gene family AT3G25820 45.455 1.24e-165 481.0
Chna2g00434 . 53 597 TPS gene family AT3G25810 38.378 4.15e-123 372.0
Chna5g00732 . 152 569 TPS gene family AT1G61680 42.143 8.19e-113 342.0
Chna5g03637 . 41 547 TPS gene family AT5G23960 34.884 3.53e-104 321.0
Chna8g02799 . 7 547 TPS gene family AT5G23960 35.262 1.43e-108 333.0
Chna1g00869 . 1 547 TPS gene family AT5G23960 38.768 1.34e-128 385.0
Chna8g02800 . 7 547 TPS gene family AT5G23960 35.252 6.53e-109 334.0
Chna2g03286 . 252 546 TPS gene family AT5G23960 38.047 1.86e-71 228.0
Chna8g01702 . 81 290 TPS gene family AT3G25820 40.0 2.31e-37 135.0
Chna00038769g00006 . 27 539 TPS gene family AT4G16730 33.721 1.21e-103 320.0
Chna4g03295 . 7 495 TPS gene family AT5G23960 34.949 6.91e-105 322.0
Chna3g00244 . 14 562 TPS gene family AT4G16740 41.391 1.18e-146 434.0
Chna00001144g00001 . 331 523 TPS gene family AT5G23960 34.197 3.68e-35 136.0
Chna6g01323 . 76 473 TPS gene family AT1G61680 34.772 3.84e-67 224.0
Chna5g04970 . 60 592 TPS gene family AT3G25820 41.53 6.15e-144 426.0
Chna1g01380 . 76 569 TPS gene family AT1G61680 42.914 1.52e-147 434.0
Chna5g04888 . 4 542 TPS gene family AT5G23960 36.314 2.15e-113 346.0
Chna3g03172 . 4 547 TPS gene family AT5G23960 33.094 6.06e-108 332.0
Chna6g04040 . 12 788 TPS gene family AT1G61120 41.013 0.0 598.0
Chna4g00808 . 444 547 TPS gene family AT5G23960 40.952 1.23e-21 87.0
Chna2g01957 . 484 595 TPS gene family AT3G25810 39.286 2.29e-18 77.4
Chna4g01043 . 122 547 TPS gene family AT5G23960 38.337 1.45e-103 316.0
Chna8g02789 . 4 542 TPS gene family AT5G23960 32.907 1.32e-96 301.0
Chna00038757g00008 . 26 358 TPS gene family AT4G16740 39.306 1.94e-66 221.0