AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g02140 ATGTTATCGAGATCATCTTCAATGAAGGGGCTTTTTAAGCCCAAGCCTCGTACACCTGTCGACCTTGTTCGTTTTCTTCGTACTTTGTTGCCATATACCGAACCTAATCCGAATCCCGCAGTCCGTAAAGCCAAGCTCAAGGAGAAGATTGATGAAATAAGAAAAGTCATTTTCGAAATGAGGACAGTACTTTATGGAGATGAGCGTTCAGAACCAGTGGAAGACGCGTGTGCAAAGTTGACACAAGAATTTTTCAAAGAAGACACGTTCCGCATGTTAATAGCTTCTCTTCCTAGTTTGGACCCTGGGACACGCCAAGATATTACGCATGTGATTGCAAATTTGCAGAGGCAACGTGCAAATGGACGATGTGTTGCCTCTGATTACTTGGAGTGCAATACAGACATTCTGGATAAGCTGCTACCTGGCTGTGATGACTTGGAGCTTGCTTTAGCATATGGTGCAATTTTAAGAGAATGTATTAGGCATCAAGTTGCTGCAAAATATATTTTGGAGTCAGATCAGATAAAAAAGTTCTTCATGTATGTGCAAGATCCAAGTTTTGACAAAGCATCAGATGCTGCAGCAACATTTAGATTCTTCAAGGAGTACAACACATTGCTGGAATCTCCCAACTACATCACAAGAAGGAGTGCTATAAAGCTGTTAGGATCAGTATTACTGGATCGTGCGAATAGCTGTGTGATGGTTCGATATGTGTGTTCATTGGACAACATGAGAGTTCTCATGAATCTTCTTAGGGATTCAAACAAGAGCATACAGGTAGAAGCTTTCCATGTGTTCAAGCTTTTTGTAGCTAATCAGAAAAAGCCCTCAGAGATTGTGAGTGTGCTAATCGCTAATAGAAGCAAACTCATTCGCTTTTTTAGCGACTTCAGTTTGGAAAAAGCTGATGAACAATTTGAAGCAGACAAAGCTGAAGTGGTTAAGGTAATTGCCACTCTTGAGCTGAAAGGTCAACCATGCTCGACGTTGAAGCAATCCGAGGAAAACTCATACCAATAA 1026 41.23 MLSRSSSMKGLFKPKPRTPVDLVRFLRTLLPYTEPNPNPAVRKAKLKEKIDEIRKVIFEMRTVLYGDERSEPVEDACAKLTQEFFKEDTFRMLIASLPSLDPGTRQDITHVIANLQRQRANGRCVASDYLECNTDILDKLLPGCDDLELALAYGAILRECIRHQVAAKYILESDQIKKFFMYVQDPSFDKASDAAATFRFFKEYNTLLESPNYITRRSAIKLLGSVLLDRANSCVMVRYVCSLDNMRVLMNLLRDSNKSIQVEAFHVFKLFVANQKKPSEIVSVLIANRSKLIRFFSDFSLEKADEQFEADKAEVVKVIATLELKGQPCSTLKQSEENSYQ 341
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g02140 341 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 8 324 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Chna2g02140 341 Gene3D - 9 322 IPR011989 -
Chna2g02140 341 Pfam Mo25-like 199 323 IPR013878 -
Chna2g02140 341 SUPERFAMILY ARM repeat 17 322 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g02140 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:207312156 Chna2g02140 Chna-Chr2:225445874 dispersed
Chna Chna-Chr2:225445874 Chna5g01044 Chna-Chr5:51152904 dispersed