AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna2g02640 ATGCTCTTCTCACCAGGCCACTCCCCACGGGGTTTCTCCACCCCATCTCCGTCACCAGCACCGTCATCTTCTCACACACCGTCACTTAACGCCGTTAACTCAAACCCTCAAAACCCTAGAAAACGAAACTCATCATCATCAACGGTGCTTGACGAAGACACATATGTAGCAGCAATTGAGAAAATAATCGAACGTGATTACTTTCCTGACATTCCTAAGCTTCGCGACCGGTTAGATTTGCTCGAGGCGTCTCGAACGGGCGATCCGATGCTTATTCGTGACGCGCAGTTGAAGATTATCGAGCGGCGGTCCGGGAAAACTACGGGTAGTGATACGGCAGGTAAGTTTCGCACGCCTGGGTCGACTTTTTTTAGAAATAGTGTCTCCTTAGGGTTTGATCAAACACCTGTTGAAAATGTAAATGTCGATAAGGAGAAGAGTTCGGTTGATGATAATGCTGATAGTATGGATGAGTTGACGTTGGACGCGTTTTTTAGACGGTATACGAGTGAGGATAACGAGAGTTTTAGTAAACTGATTGAGAAGGTTAATAAGAGGAAGAAGGAGAGGTATGGGTTTTTGTTGGATGGGGAGAATCGTGGGACGGGTGGTTTGATTGAGGATGTGAAGAAGGATAGGATTACGGATGGGTACGGGACGTCGGATCAGCCTTTGGCGACTTTGGAGAGCTGGAAGTATACCGCGAAGAATTTGTTGATGTATCATCCGGCAGATAGAGGTGAGGTAGCGTTGACGAATGATGAGTTGGCGAATAGGATTAATGGGATGACTAAGGAGATTAGTAAGACGAATACGAGGTTTCACGGGAAGGTGAGTGATTATAGGGGTAGAGATGATGATGAGGTTTCGGTGATTTATAACCCGGTTGCTGGTGGGACGCCTGTTCCATGGTCTTTGTCAGATAGGGATGGAGATAAGGGGAAGAAGTATGATTTGGAGGAAATGAAGAAGACGCCTAATCCGTTTTATGTTGAGTCGAATAAGAAAGCGGATAATGGGTATAGTTTTGTGAAGACGCCGTCGCCTGCACCAGGTGTGGATGAGTCGCCGTTTATAACGTGGGGTGAGATTGAAGGGACGCCGTTGAGATTGGAAGATGAAGATACTCCTATTGATATTGGTGGCAGTGGAAACGGGCCTCATTTTAATATCCCTCTTCCACCTTCACGGGATTTAAAGGCTCATTCTTTGTCAAGAGATGCTTCTCGGAAACTGAGGGATCGGTCGCTGATGTTTCAGAAACCGCCATTGCATTCTCCGGCTAGAAGTGGTAGTGCTAGTCCTAGTGCGCGGACACTTTCACCTGCTGCACAGAAGTTTGTTAGAAATGCTATCGCCAAGTCTTCTCGTTCGGCTACTGTTGATGAATCGCTTCGTGCAAGTTATCGTGGGTCGAGTCCTGGATTAGCTACACCAAAACCTGGAAGGAGTACATCGAGGTTGGCAAGAGATGGTAGCGTGAGTTTGAGGTCGCCATCTGTAGGGGACGGCTCTAATCCTCCTTGGTAA 1530 47.32 MLFSPGHSPRGFSTPSPSPAPSSSHTPSLNAVNSNPQNPRKRNSSSSTVLDEDTYVAAIEKIIERDYFPDIPKLRDRLDLLEASRTGDPMLIRDAQLKIIERRSGKTTGSDTAGKFRTPGSTFFRNSVSLGFDQTPVENVNVDKEKSSVDDNADSMDELTLDAFFRRYTSEDNESFSKLIEKVNKRKKERYGFLLDGENRGTGGLIEDVKKDRITDGYGTSDQPLATLESWKYTAKNLLMYHPADRGEVALTNDELANRINGMTKEISKTNTRFHGKVSDYRGRDDDEVSVIYNPVAGGTPVPWSLSDRDGDKGKKYDLEEMKKTPNPFYVESNKKADNGYSFVKTPSPAPGVDESPFITWGEIEGTPLRLEDEDTPIDIGGSGNGPHFNIPLPPSRDLKAHSLSRDASRKLRDRSLMFQKPPLHSPARSGSASPSARTLSPAAQKFVRNAIAKSSRSATVDESLRASYRGSSPGLATPKPGRSTSRLARDGSVSLRSPSVGDGSNPPW 509
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna2g02640 509 Coils Coil 253 273 - -
Chna2g02640 509 MobiDBLite consensus disorder prediction 451 467 - -
Chna2g02640 509 MobiDBLite consensus disorder prediction 400 418 - -
Chna2g02640 509 PANTHER ES-2 PROTEIN - RELATED 23 499 IPR019148 GO:0071013(PANTHER)
Chna2g02640 509 MobiDBLite consensus disorder prediction 488 502 - -
Chna2g02640 509 MobiDBLite consensus disorder prediction 427 443 - -
Chna2g02640 509 MobiDBLite consensus disorder prediction 23 49 - -
Chna2g02640 509 MobiDBLite consensus disorder prediction 1 49 - -
Chna2g02640 509 Pfam Nuclear protein Es2 47 447 IPR019148 -
Chna2g02640 509 MobiDBLite consensus disorder prediction 380 509 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna2g02640 K13118 protein DGCR14
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr2:32783222 Chna2g02640 Chna-Chr2:298433690 dispersed
Chna Chna-Chr5:342475666 Chna2g02640 Chna-Chr2:298433690 transposed
Chna Chna-Chr7:345686837 Chna2g02640 Chna-Chr2:298433690 transposed
Chna Chna-Chr2:32775345 Chna2g02640 Chna-Chr2:298433690 wgd