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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna6g01845 ATGGCACTTTTGGAGTCAAAAAAGGACAGAGGTGAGGTGAGGATTCATGAGAGTTTGGAAGAACTTAGCACCGATTTAGCGGATTACATAGCGGAATTATCTGAAGCATCGGTTAAAGAACGAGGTTTTTTCGCCATTGCTTTATCGGGTGGTTCACTTATTAGCTTGATGAGGAATTTGTGTGGAGCGCCTTATAACAAGACTGTAGATTGGTCTAAATGGTATATATTTTGGGTGGATGAACGTGTTGTTGCGAAGAATCATGTTGATAGTAACTATAAGCTTGCTAAAGATCATCTGTTGTCCAAGTTGCCTATTGTTCCAAGCCATGTACATTCCATCAATGATTCTCTCACAGCAGAAGAAGCTGCAAATGAGTACGAGTTTGTGATCAGACAGTTAGTCAGAACCCGCGTGGTTAATGTTTCTGATGTCAGCGACTGCCCGAAGTTTGATCTAATCCTACTAGGGATGGGGCCAGATGGTCACGTGGCATCTTTGTTCCCTAACCATTCAGTTCTTGAAGAAAAGAATGAATGGGTGACATTCATCACCACATCCCCTAAACCACCACCCGAAAGAATCACATTCACATTGCCTGTTATCAACTCTGCAGCCAATGTGGCAGTAGTCGTGACAGGTATAGAAAAAGCGGAAGCTGCCCGTCTGGTGATAGATGACGTGGGACCTGAGTGCCCGGTTTTGCCAGCTAGGATGATTGAGCCAGCTGTAGGGAAACTGGCCTGGTTTTTGGATAACCAGGCTGGTTCAAAGCTAAAGTGCTTTTCTCAAATTTCTAAGTAG 804 44.03 MALLESKKDRGEVRIHESLEELSTDLADYIAELSEASVKERGFFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWVDERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGIEKAEAARLVIDDVGPECPVLPARMIEPAVGKLAWFLDNQAGSKLKCFSQISK 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna6g01845 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Chna6g01845 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 261 IPR037171 -
Chna6g01845 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Chna6g01845 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Chna6g01845 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Chna6g01845 267 Coils Coil 19 39 - -
Chna6g01845 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Chna6g01845 267 Gene3D - 9 262 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna6g01845 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Event-related genes

Select Gene_1 Gene_2 Event_name
58435 Chna1g02404 Chna6g01845
58437 Chna1g02406 Chna6g01845
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1586521 Chna Chna1g02404 Chna-Chr1:220460182 Chna6g01845 Chna-Chr6:114937225
1586523 Chna Chna1g02406 Chna-Chr1:220620229 Chna6g01845 Chna-Chr6:114937225
1603375 Chna Chna6g01845 Chna-Chr6:114937225 Chna9g00026 Chna-Chr9:812400