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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chna8g01007 ATGGAAAACGACTTCGATCGACTTCTCTTCTTCGAACACGCCCGCCGTACTGCCGAACTCACTTACACCAAAAACCCACTCGACACCGAGGTACCTGCGATCTCGAAATTGGATGAAGCGTTAAAGATTGATCCGAGGAAACATGATACGTTGTGGTGTATGGGAAATGCGCAAACTTCTTATGCTTTTTTGACTCGTGAGGAGGACGAAGCTAAGGGTTATTTTGATTCGGCGTATGTTTACTTTCAGCAGGCTGTTGAAGAGGATCCGGGGAACACACTTTACCGCAAGTCATTGGAAGTGGCTGTGAAGGCTCCTGAATTACATGCTGAGCTCCATAAACAGGGATCTATTCAACAAGCTATGGGACCAGTGGCAGGAGGTGGTCCTTCGACCTCTTCTAGTATCAAGGGTCCGAAGACACAAAAAAACAGCGATCTGACATATGACATACTTGGGTGGGCTATTCTTGCTGTTACTATTGTGGCATGGGTTGGATTCGCCAAAGCAAATGTACCTCCACCACCTTCTCGATAA 537 46.93 MENDFDRLLFFEHARRTAELTYTKNPLDTEVPAISKLDEALKIDPRKHDTLWCMGNAQTSYAFLTREEDEAKGYFDSAYVYFQQAVEEDPGNTLYRKSLEVAVKAPELHAELHKQGSIQQAMGPVAGGGPSTSSSIKGPKTQKNSDLTYDILGWAILAVTIVAWVGFAKANVPPPPSR 178
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chna8g01007 178 MobiDBLite consensus disorder prediction 120 142 - -
Chna8g01007 178 Pfam Plant specific mitochondrial import receptor subunit TOM20 33 169 - -
Chna8g01007 178 Pfam Plant specific mitochondrial import receptor subunit TOM20 5 30 - -
Chna8g01007 178 Gene3D Tetratricopeptide repeat domain 32 122 IPR011990 GO:0005515(InterPro)
Chna8g01007 178 Gene3D Tetratricopeptide repeat domain 1 31 IPR011990 GO:0005515(InterPro)
Chna8g01007 178 PANTHER MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20-1-RELATED 2 30 IPR010547 GO:0005742(InterPro)|GO:0045040(InterPro)
Chna8g01007 178 SUPERFAMILY TPR-like 33 102 IPR011990 GO:0005515(InterPro)
Chna8g01007 178 MobiDBLite consensus disorder prediction 126 142 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chna8g01007 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
60277 Chna8g01007 Chna9g01858
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chna Chna-Chr8:98935281 Chna8g02110 Chna-Chr8:166142957 wgd
Chna Chna-Chr8:98935281 Chna9g01858 Chna-Chr9:79457842 wgd